1 5' 3' | 2 5' 3' | 3 5' 3' |
gtctgtttctgttctttaatatgactaattaactattaactattgctttgaatgcttgctaatgatacaaactgtcgcttgagtgcagATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCATAGAAAGTGCTTCTAAATTGTTTGGTTGATAGGGTTATTGAAGAAAAAGA
species | Glycine max |
transcript | GLYMA19G00850.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAG ATGTGGATTGCGAAGGCCA-AGTACGACCAGTCTGGACCATCAATTTGT-CEST: gi|6964156|gb|AW432849.1|AW432849
genomic: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAGgtctgtttct ... ttgagtgcagATGTGGATTGCGAAGGC-AGAGTACGACGAGTCTGGACCATCAATT-GTTC
EST: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAG ATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCATEST: gi|31456689|gb|CD398717.1|CD398717
genomic: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAGgtctgtttct ... ttgagtgcagATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCAT
EST: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAG ATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCATEST: gi|151407979|gb|EV277794.1|EV277794
genomic: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAGgtctgtttct ... ttgagtgcagATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCAT
EST: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAG ATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCAT
genomic: GTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAGgtctgtttct ... ttgagtgcagATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCAT
tattaactattgctttgaatgcttgctaatgatacaaactgtcgcttgagtgcagATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCATAGAAAGTGCTTCTAAATTGTTTGGTTGATAGGGTTATTGAAGAAAAAGA
taatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtttctgttctttaatatgactaattaactattaactattgctttgaatgcttgctaatgatacaaactgtcgcttgagtgcagATGTGGATTGCGAAGGCAGAGTACGACGAGTCTGGACCATCAATTGTTCATAGAAAGTGCTTCTAAATTGTTTGGTTGATAGGGTTATTGAAGAAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA