1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtttcccggtgattcttattgtgtatgataatttaatgttgtctttggttcatatttctccctctttttatatttaaaatgatttttttgctgttttgtaGGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCACTTGGTGGAATACTTGGATTTGGAAAAGCTAATTCATCAATGATTTCACA
species | Glycine max |
transcript | GLYMA18G51920.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTGTCTGGGGACCTTAAAACTGATTCAGCAAATGGAAGTATTGTATTTG GGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCACEST: gi|23726643|gb|BU761321.1|BU761321
genomic: AGTGTCTGGGGACCTTAAAACTGATTCAGCAAATGGAAGTATTGTATTTGggtgagtttt ... ctgttttgtaGGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCAC
EST: AGTGTCTGGGGACCTTAAAACTGATTCAGCAAATGGAAGTATTGTATTTG GGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCACEST: gi|7795285|gb|AW780682.1|AW780682
genomic: AGTGTCTGGGGACCTTAAAACTGATTCAGCAAATGGAAGTATTGTATTTGggtgagtttt ... ctgttttgtaGGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCAC
EST: AGTGTCTGGGGACCTTAAAACTGATTCAGCAAATGGAAGTATTGTATTTG GGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCACEST: gi|120492464|gb|EH220631.1|EH220631
genomic: AGTGTCTGGGGACCTTAAAACTGATTCAGCAAATGGAAGTATTGTATTTGggtgagtttt ... ctgttttgtaGGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCAC
EST: AGTGTCTGGGGACCTTAAAACTGATTCAGCAAATGGAAGTATTGTATTTG GGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCACEST: gi|209707190|gb|BW656808.1|BW656808
genomic: AGTGTCTGGGGACCTTAAAACTGATTCAGCAAATGGAAGTATTGTATTTGggtgagtttt ... ctgttttgtaGGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCAC
EST: AGTGTCTGGGGACCTTAAAACTGATTCAGCAAATGGAAGTATTGTATTTG GGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCACEST: gi|17023874|gb|BM094908.1|BM094908
genomic: AGTGTCTGGGGACCTTAAAACTGATTCAGCAAATGGAAGTATTGTATTTGggtgagtttt ... ctgttttgtaGGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCAC
EST: ATTCAGCAAATGGAAGTATTGTATTTG GGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCAC
genomic: ATTCAGCAAATGGAAGTATTGTATTTGggtgagtttt ... ctgttttgtaGGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCAC
tggttcatatttctccctctttttatatttaaaatgatttttttgctgttttgtaGGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCACTTGGTGGAATACTTGGATTTGGAAAAGCTAATTCATCAATGATTTCACA
tttttttgctgtttt CT-rich tract
tttttatatttaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcccggtgattcttattgtgtatgataatttaatgttgtctttggttcatatttctccctctttttatatttaaaatgatttttttgctgttttgtaGGTGTGGTGCAAGACAATCTGGAGATCTAAGTTCTTCGAATGAAGAGGCACTTGGTGGAATACTTGGATTTGGAAAAGCTAATTCATCAATGATTTCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
gtttccc
- - - -ggtgatt
- - - - - - - - - - -tgtatga