1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatagtttcatctgattatagtcataaggttaatacaatatcatttttcttgctatgatgatttagtgttctgatttgtgtatactctaatcggcatttttcttgttggattatgattttttgtgtttctctcactctctcaactatttctgatgtacttttactgatttctgtgtttcctccactgctttccagTTCACACAATGGAGGAATTGAAGCTTACGGGAAATCACCTACAGGGTTCCCGTCCAATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAA
species | Glycine max |
transcript | GLYMA18G51310.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAATTTCTAGTTAGTGCTA TTCACACAATGGAGGAATTGAAGCTTACGGGAAATCACCTACAGGGTTCCCEST: gi|16996384|gb|BM085756.1|BM085756
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAATTTCTAGTTAGTGCTGgtaatagttt ... tgctttccagTTCACACAATGGAGGAATTGAAGCTTACGGGAAATCACCTACAGGGTTCCC
EST: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAATTTCTAGTTAGTGCTG TTCACACAATGGAGGAATTGAAGCTTACGGGAAATCACCTACAGGGTTCCC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAATTTCTAGTTAGTGCTGgtaatagttt ... tgctttccagTTCACACAATGGAGGAATTGAAGCTTACGGGAAATCACCTACAGGGTTCCC
caactatttctgatgtacttttactgatttctgtgtttcctccactgctttccagTTCACACAATGGAGGAATTGAAGCTTACGGGAAATCACCTACAGGGTTCCCGTCCAATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAA
tactgat putative branch site (score: 2)
tttcctccactgcttt putative PPT
tactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatagtttcatctgattatagtcataaggttaatacaatatcatttttcttgctatgatgatttagtgttctgatttgtgtatactctaatcggcatttttcttgttggattatgattttttgtgtttctctcactctctcaactatttctgatgtacttttactgatttctgtgtttcctccactgctttccagTTCACACAATGGAGGAATTGAAGCTTACGGGAAATCACCTACAGGGTTCCCGTCCAATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG