1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggggtcgcctgctccgctccgtgatgacgggattgacaactatggaagcaatataacctccacaattcttacatttgtttcaattgtttttgcttgcagaATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTTGTTGTATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTT
species | Glycine max |
transcript | GLYMA18G50950.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGA ATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCAEST: gi|17401377|gb|BM178159.1|BM178159
genomic: GTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGGtaagagtgtt ... tgcttgcagaATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCA
EST: GTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGA ATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCAEST: gi|58022273|gb|CX709014.1|CX709014
genomic: GTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGGtaagagtgtt ... tgcttgcagaATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCA
EST: GTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGA ATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCAEST: gi|21677338|gb|BQ629689.1|BQ629689
genomic: GTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGGtaagagtgtt ... tgcttgcagaATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCA
EST: GTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGA ATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCAEST: gi|19271176|gb|BM887432.1|BM887432
genomic: GTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGGtaagagtgtt ... tgcttgcagaATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCA
EST: GTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGA ATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCA
genomic: GTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGGtaagagtgtt ... tgcttgcagaATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCA
aagcaatataacctccacaattcttacatttgtttcaattgtttttgcttgcagaATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTTGTTGTATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTT
ttcttac putative branch site (score: 2)
tttttgctt putative PPT
tttcaattgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggtcgcctgctccgctccgtgatgacgggattgacaactatggaagcaatataacctccacaattcttacatttgtttcaattgtttttgcttgcagaATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTTGTTGTATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - -cgcctgc
- - - - - - -ccgctcc
- - - - - - - - - - -tgatgac
- - - - - - - - - - - - - - gggattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccac