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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttaatatttaagtttaattcctaaccatatattattttaaattttcaattacattatctaaacatactcctaaccttaaaatgttgtcattttttgcagACAGGACAGCTATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGCATTGTAGCCGGGTAAGTTTAGCAAAAAAGAAAAGAAAAATGATCCTCAC

Basic information

species Glycine max
transcript GLYMA18G49410.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715044|gb|BW677087.1|BW677087
EST:     CATACACCATGGTGTTCATTTCCATGGCCGTGGCCACTGACTCAAACGCG                         ACAGGACAGCTATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGC
genomic: CATACACCATGGTGTTCATTTCCATGGCCGTGGCCACCGACTCAAACGCGgtaagaatca ... ttttttgcagACAGGACAGCTATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGC
EST: gi|192297066|gb|FG990337.1|FG990337
EST:     CATACACCATGGTGTTCATTTCCATGGCCGTGGCCACCGACTCAAACGCG                         ACAGGACAGCTA
genomic: CATACACCATGGTGTTCATTTCCATGGCCGTGGCCACCGACTCAAACGCGgtaagaatca ... ttttttgcagACAGGACAGCTA
EST: gi|31458073|gb|CD400101.1|CD400101
EST:     CATACACCATGGTGTTCATTTCCATGGCCGTGGCCACCGACTCAAACGCG                         ACAGGACAGCTATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGC
genomic: CATACACCATGGTGTTCATTTCCATGGCCGTGGCCACCGACTCAAACGCGgtaagaatca ... ttttttgcagACAGGACAGCTATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGC
EST: gi|31461708|gb|CD403736.1|CD403736
EST:     CATACACCATGGTGTTCATTTCCATGGCCGTGGCCACCGACTCAAACGCG                         ACAGGACAGCTATCCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAG
genomic: CATACACCATGGTGTTCATTTCCATGGCCGTGGCCACCGACTCAAACGCGgtaagaatca ... ttttttgcagACAGGACAGCTATC-AGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAG
EST: gi|31305944|gb|CD391147.1|CD391147
EST:     CATACACCATGGTGTTCATTTCCATGGCCGTGGCCACCGACTCAAACGCG                         ACAGGACCCC-ATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGC
genomic: CATACACCATGGTGTTCATTTCCATGGCCGTGGCCACCGACTCAAACGCGgtaagaatca ... ttttttgcagACAGGACAGCTATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaattacattatctaaacatactcctaaccttaaaatgttgtcattttttgcagACAGGACAGCTATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGCATTGTAGCCGGGTAAGTTTAGCAAAAAAGAAAAGAAAAATGATCCTCAC
                       tcctaac  putative branch site (score: 1)
                                          tcatttttt  putative PPT
        attatctaaacata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttaatatttaagtttaattcctaaccatatattattttaaattttcaattacattatctaaacatactcctaaccttaaaatgttgtcattttttgcagACAGGACAGCTATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGCATTGTAGCCGGGTAAGTTTAGCAAAAAAGAAAAGAAAAATGATCCTCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA