1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cctatggttagtgtcataaaatatttgtctttgacatgtagtctactttttagagattgtgtttggattaacctgatgataatgtttatttgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
species | Glycine max |
transcript | GLYMA18G48610.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTEST: gi|21993817|gb|BQ785345.1|BQ785345
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|213615420|gb|DB965506.1|DB965506
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|298174542|gb|HO017765.1|HO017765
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|8403151|gb|BE058785.1|BE058785
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|213619737|gb|DB967359.1|DB967359
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|13181256|gb|BG352596.1|BG352596
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|213590611|gb|DB973342.1|DB973342
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|192299109|gb|FG992870.1|FG992870
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAACACCATTGGAGTTGATTTEST: gi|209726159|gb|BW677900.1|BW677900
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|213617461|gb|DB965248.1|DB965248
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|254317319|gb|GR826264.1|GR826264
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|298182292|gb|HO026467.1|HO026467
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|21600841|gb|BQ611172.1|BQ611172
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TTANGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|151407899|gb|EV277714.1|EV277714
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|192322414|gb|FK014895.1|FK014895
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|8826765|gb|BE210495.1|BE210495
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|14259352|gb|BG882260.1|BG882260
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|209719631|gb|BW672086.1|BW672086
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|298184517|gb|HO029730.1|HO029730
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTEST: gi|213602253|gb|DB958513.1|DB958513
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
EST: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGC TGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
genomic: CTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCtgtaagcttt ... tgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
ctttttagagattgtgtttggattaacctgatgataatgtttatttgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
tttattt CT-rich tract
atgataatgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctatggttagtgtcataaaatatttgtctttgacatgtagtctactttttagagattgtgtttggattaacctgatgataatgtttatttgatgctacaGGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - gttagtg
- - - - - - - -ataaaata
- - - - - - - - - - - - - gtctttg
- - - - - - - - - - - - - - - - -acatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - gattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgatg