1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
tgagttcatttgttatctgttagaggagttttgtttgatttatcttcaatgcaacgatggaaagtttgtggatacgcccttttttgtttcataatgtgatgtgatttgcagaTATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATG
species | Glycine max |
transcript | GLYMA18G48290.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTAATGAGACGTTTTTGGGACTGCTTTATCCTATTGAAAACTACAAAGTA TATGGATATCTGAC---T---AAGGTGAAATTTATCTTGGTGACCACGGATEST: gi|298181124|gb|HO022563.1|HO022563
genomic: TTAATGAGACGTTTTTGGGACTGCTTTATCCTATTGAAAACTACAAAGTGtgagttcatt ... gatttgcagaTATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGAT
EST: TTAATGAGACGTTTTTGGGACTGCTTTATCCTATTGAAAACTACAAAGTA TATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGATEST: gi|193637063|gb|FK579004.1|FK579004
genomic: TTAATGAGACGTTTTTGGGACTGCTTTATCCTATTGAAAACTACAAAGTGtgagttcatt ... gatttgcagaTATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGAT
EST: TTAATGAGACGTTTTTGGGACTGCTTTATCCTATTGAAAACTACAAAGTA TATGGATATCTGACTAEST: gi|31475033|gb|CD417061.1|CD417061
genomic: TTAATGAGACGTTTTTGGGACTGCTTTATCCTATTGAAAACTACAAAGTGtgagttcatt ... gatttgcagaTATGGATATCTGACTA
EST: TTAATGAGACGTTTTTGGGACTGCTTTATCCTATTGAAAACTACAAAGTA TATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGATEST: gi|298163727|gb|HO012460.1|HO012460
genomic: TTAATGAGACGTTTTTGGGACTGCTTTATCCTATTGAAAACTACAAAGTGtgagttcatt ... gatttgcagaTATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGAT
EST: TTAATGAGACGTTTTTGGGACTGCTTTATCCTATTGAAAACTACAAAGTA TATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGAT
genomic: TTAATGAGACGTTTTTGGGACTGCTTTATCCTATTGAAAACTACAAAGTGtgagttcatt ... gatttgcagaTATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGAT
tggaaagtttgtggatacgcccttttttgtttcataatgtgatgtgatttgcagaTATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATG
ttttttgtttcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagttcatttgttatctgttagaggagttttgtttgatttatcttcaatgcaacgatggaaagtttgtggatacgcccttttttgtttcataatgtgatgtgatttgcagaTATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA