1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgcagtgtgcatcgcactgctttctcacaatttatattttggaatcccgtcctctgataaaatgagaattctcaccatttttttctttctttctttgcagTACCCGGATTTGAAGCCACCATCATCTCCAACTCCGTCAAAGCCACAATAGTTCTGTTTGTTATACCATGCTCGGCTGACATCTGTTTGGCAGAAATGAT
species | Glycine max |
transcript | GLYMA18G48200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTCAGAAGTGAAAACTGGTTCTGTAGCATCCTCCTCTCCTTATCCCAAT TACCCGGATTTGAAGCCACCATCAEST: gi|193381879|gb|FK348436.1|FK348436
genomic: TTTCAGAAGTGAAAACTGGTTCTGTAGCATCCTCCTCTCCTTATCCCAATgtatgttatc ... ttctttgcagTACCCGGATTTGAAGCCACCATCA
EST: TTTCAGAAGTGAAAACTGGTTCTGTAGCATCCTCCTCTCCTTATCCCAAT TACCCGGATTTGAAGCCACCATCATCTCCAACTCCGTCAAAGCCACAATAG
genomic: TTTCAGAAGTGAAAACTGGTTCTGTAGCATCCTCCTCTCCTTATCCCAATgtatgttatc ... ttctttgcagTACCCGGATTTGAAGCCACCATCATCTCCAACTCCGTCAAAGCCACAATAG
cccgtcctctgataaaatgagaattctcaccatttttttctttctttctttgcagTACCCGGATTTGAAGCCACCATCATCTCCAACTCCGTCAAAGCCACAATAGTTCTGTTTGTTATACCATGCTCGGCTGACATCTGTTTGGCAGAAATGAT
ttctcac putative branch site (score: 2)
ttctcaccattttttt CT-rich tract
atttttttctttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcagtgtgcatcgcactgctttctcacaatttatattttggaatcccgtcctctgataaaatgagaattctcaccatttttttctttctttctttgcagTACCCGGATTTGAAGCCACCATCATCTCCAACTCCGTCAAAGCCACAATAGTTCTGTTTGTTATACCATGCTCGGCTGACATCTGTTTGGCAGAAATGAT
- - gtgtgca
- - - - - - - cactgct
- - - - - - - - - - - - - - - - - - - - - - -cccgtcc