1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaagccaaaaccaagctttattgattggcactgtgccatatcttctggtatttatgtaaatattggtgaattactcttctgaacttttttaccctgtaggACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCTACTGTCACACTTCGTCAGCC
species | Glycine max |
transcript | GLYMA18G46540.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTGGGATGGGATTCACTCCTCATATAATCAATATTGCAAGTGGAGAAG ACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTATEST: gi|7042138|gb|AW472032.1|AW472032
genomic: AGCTGGGATGGGATTCACTCCTCATATAATCAATATTGCAAGTGGAGAAGtatgtgacaa ... accctgtaggACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTAT
EST: AGCTGGGATGGGATTCACTCCTCATATAATCAATATTGCAAGTGGAGAAG ACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTATEST: gi|193699766|gb|FK641649.1|FK641649
genomic: AGCTGGGATGGGATTCACTCCTCATATAATCAATATTGCAAGTGGAGAAGtatgtgacaa ... accctgtaggACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTAT
EST: GCTGGGATGGGATTCACTCCTCATATAATCAATATTAGCAAGTGGAGAAG ACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTAT
genomic: GCTGGGATGGGATTCACTCCTCATATAATCAATATT-GCAAGTGGAGAAGtatgtgacaa ... accctgtaggACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTAT
tggtatttatgtaaatattggtgaattactcttctgaacttttttaccctgtaggACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCTACTGTCACACTTCGTCAGCC
cttttttaccctgt CT-rich tract
tttatgtaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagccaaaaccaagctttattgattggcactgtgccatatcttctggtatttatgtaaatattggtgaattactcttctgaacttttttaccctgtaggACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCTACTGTCACACTTCGTCAGCC
- - -caaaacc
- - - - - - - - - - - - - - -actgtgc
- - - - - - - - - - - - - - - - - - - - tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attggtg