1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttctatcctgattttttgcccctaaaactgtgtcaccatgttgaagctaactgattcattgaacattgtaatgtaactgaaccattttttttgtgcaataGGTTCTTCCAGTGATGATAATGGGTGCCTTCATACCGGGTCTGAGAAGGAAGTATCCACTGCATGAATATATATCTGCAATACTTCTTGTAGTTGGCTTG
species | Glycine max |
transcript | GLYMA18G46240.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAAATCATGTTTCAAATCCACAAA GGTTCTTCCAGTGATGATAATGGGTGCCTTCATACCGGGTCTGAGAAGGAAEST: gi|193663967|gb|FK612467.1|FK612467
genomic: ACAAATCATG-TTCAAATCCACAAAggtaagtgac ... ttgtgcaataGGTTCTTCCAGTGATGATAATGGGTGCCTTCATACCGGGTCTGAGAAGGAA
EST: AACTACCCTGCACAAATCATGTTCAAATCCACGAA GGTTCTTCCAGTGATGATAATGGGTGCCTTCATACCGGGTCTGAGAAGGAA
genomic: AACTACCCTGCACAAATCATGTTCAAATCCACAAAggtaagtgac ... ttgtgcaataGGTTCTTCCAGTGATGATAATGGGTGCCTTCATACCGGGTCTGAGAAGGAA
gctaactgattcattgaacattgtaatgtaactgaaccattttttttgtgcaataGGTTCTTCCAGTGATGATAATGGGTGCCTTCATACCGGGTCTGAGAAGGAAGTATCCACTGCATGAATATATATCTGCAATACTTCTTGTAGTTGGCTTG
ccatttttttt CT-rich tract
attttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctatcctgattttttgcccctaaaactgtgtcaccatgttgaagctaactgattcattgaacattgtaatgtaactgaaccattttttttgtgcaataGGTTCTTCCAGTGATGATAATGGGTGCCTTCATACCGGGTCTGAGAAGGAAGTATCCACTGCATGAATATATATCTGCAATACTTCTTGTAGTTGGCTTG
- - - cctgatt
- - - - - - - - tgcccct
- - - - - - - - - - - - - - - tgtcacc
- - - - - - - - - - - - - - - - - - - tgttgaa
- - - - - - - - - - - - - - - - - - - - - - -gctaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaactg