1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taaatattctaatcatatgtatgtatgtacgtacgtacgtacttacgtactctgaccatactctttttttaacttcatcctttggtgttttccatttcagGGAATATCAAGTTCTGCTCAGTTGCTGGCAAATTCATCAGAGGAAACACCTGTTTTGTCACCTTTAGCCCCAGTTTCATTATTGAGTAGTTCAAAAGGTG
species | Glycine max |
transcript | GLYMA18G46170.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAACTTTGCCCTGTTTTTCAAGACCCGTTTTTCTCACTTTCCAACATCAG GGAATATCAAGTTCTGCTCAGTTGCTGGCAAATTCATCAGAGGAAACACCTEST: gi|192333742|gb|FK025479.1|FK025479
genomic: CAACTTTGCCCTGTTTTTCAAGACCCGTTTTTCTCACTTTCCAACATCAGgtaaaaattt ... tccatttcagGGAATATCAAGTTCTGCTCAGTTGCTGGCAAATTCATCAGAGGAAACACCT
EST: CAACTTTGCCCTGTTTTTCAAGACCCGTTTTTCTCACTTTCCAACATCAG GGAATATCAAGTTCTGCTCAGTTGCTGGCAAATTCATCAGAGGAAACACCTEST: gi|192305687|gb|FG998037.1|FG998037
genomic: CAACTTTGCCCTGTTTTTCAAGACCCGTTTTTCTCACTTTCCAACATCAGgtaaaaattt ... tccatttcagGGAATATCAAGTTCTGCTCAGTTGCTGGCAAATTCATCAGAGGAAACACCT
EST: CAACTTTGCCCTGTTTTTCAAGACCCGTTTTTCTCACTTTCCAACATCAG GGAATATCAAGTTCTGCTCAGTTGCTGGCAAATTCATCAGAGGAAACACCT
genomic: CAACTTTGCCCTGTTTTTCAAGACCCGTTTTTCTCACTTTCCAACATCAGgtaaaaattt ... tccatttcagGGAATATCAAGTTCTGCTCAGTTGCTGGCAAATTCATCAGAGGAAACACCT
cgtactctgaccatactctttttttaacttcatcctttggtgttttccatttcagGGAATATCAAGTTCTGCTCAGTTGCTGGCAAATTCATCAGAGGAAACACCTGTTTTGTCACCTTTAGCCCCAGTTTCATTATTGAGTAGTTCAAAAGGTG
ttttaac putative branch site (score: 2)
ttttccatttc putative PPT
atactctttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaatattctaatcatatgtatgtatgtacgtacgtacgtacttacgtactctgaccatactctttttttaacttcatcctttggtgttttccatttcagGGAATATCAAGTTCTGCTCAGTTGCTGGCAAATTCATCAGAGGAAACACCTGTTTTGTCACCTTTAGCCCCAGTTTCATTATTGAGTAGTTCAAAAGGTG
- - - - - - - - atgtatg
- - - - - - - - - - - -tatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - -ctgacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttt