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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgaatttcaagagcctcttgatagttgatacatatgcatgtcatctcaatcgatgtcaatcatatttggtaattcatatgcataaactttattctatcaactcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATTTTCTGATGATGCATCCTCCATTGTTGTGGCGTCTTATACTCTGTCCGGC

Basic information

species Glycine max
transcript GLYMA18G45270.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298164303|gb|HO013948.1|HO013948
EST:     GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAA                         GTTTCTAAGGATTAATTTGCCAGCCGGTGGTCATCAAACAGCAGTTGCATT
genomic: GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaat ... tcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
EST: gi|192296388|gb|FG989092.1|FG989092
EST:     GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAA                         GTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
genomic: GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaat ... tcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
EST: gi|298182408|gb|HO026583.1|HO026583
EST:     GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAA                         GTTTCTAAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
genomic: GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaat ... tcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
EST: gi|192295611|gb|FG990465.1|FG990465
EST:     GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAA                         GTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
genomic: GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaat ... tcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
EST: gi|209725596|gb|BW677898.1|BW677898
EST:     GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAA                         GTTTCTAAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
genomic: GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaat ... tcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
EST: gi|213593130|gb|DB966067.1|DB966067
EST:     GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAA                         GTTTCTAAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT
genomic: GGAGTTGTGAGAGTATTTAAGTTGGATGATGCTTCAAGTAAAAGTTTCAAgtatgtgaat ... tcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatcatatttggtaattcatatgcataaactttattctatcaactcttttgcagGTTTCTGAGGATTAATTTGCCAGCCGGTGGTCATCCAACAGCAGTTGCATTTTCTGATGATGCATCCTCCATTGTTGTGGCGTCTTATACTCTGTCCGGC
                                            ctcttttgc  CT-rich tract
                         ataaactttattctat  TA-rich tract