1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tccagtgtgtaagttttatcactactaaaacttgagtgctgagacttcattattttatcaagcacatctttggcccaacaaatggttaatctatttgacaGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAATAGTTATATAGTAGCCTCACTACATTCTATAAGAAAGTCACATGGGTCA
species | Glycine max |
transcript | GLYMA18G44940.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAGGTGGAGATGTTGATGTTTATGATCTTCAAGCTCTTTGTGACAA GGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAAEST: gi|20812778|gb|BQ297256.1|BQ297256
genomic: TCTTCAGGTGGAGATGTTGATGTTTATGATCTTCAAGCTCTTTGTGACAAggtgtgtatc ... ctatttgacaGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAA
EST: TCTTCAGGTGGAGATGTTGATGTTTATGATCTTCAAGCTCTTTGTGACAA GGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGA
genomic: TCTTCAGGTGGAGATGTTGATGTTTATGATCTTCAAGCTCTTTGTGACAAggtgtgtatc ... ctatttgacaGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGA
ttcattattttatcaagcacatctttggcccaacaaatggttaatctatttgacaGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAATAGTTATATAGTAGCCTCACTACATTCTATAAGAAAGTCACATGGGTCA
ggttaat putative branch site (score: 4)
tctattt CT-rich tract
tattttatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccagtgtgtaagttttatcactactaaaacttgagtgctgagacttcattattttatcaagcacatctttggcccaacaaatggttaatctatttgacaGGTAGGGTGGCCGCGTAGACCGTTGTCAAAATTAGCTGCCGCTTTGAAAAATAGTTATATAGTAGCCTCACTACATTCTATAAGAAAGTCACATGGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-ccagtgt
- - - - - - - - - - - - - - - - tgagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaacaa