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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tgagtttaactttaaggttttttgtttcttctgtttttgtttttaatctgcaggattaatctctggttctcttttgttgaatgttcagaGAGGATCTAGCACGCATATATACAGCTGAGATTGTTTCTGCAGTTTCCCATCTCCATGCAAATGGAATAATGCATAGGGATCTAAAGCCTGAAAATATCC

Basic information

species Glycine max
transcript GLYMA18G44520.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339363|gb|GR848080.1|GR848080
EST:     TAAATGGGGGCCATCTCTTTTTCCAGCTTTATCACCAAGGCCTTTTCAGA                         GAGGATCTAGCACGCATATATACAGCTGAGATTGTTTCTGCAGTTTCCCAT
genomic: TAAATGGGGGCCATCTCTTTTTCCAGCTTTATCACCAAGGCCTTTTCAGGtgagtttaac ... aatgttcagaGAGGATCTAGCACGCATATATACAGCTGAGATTGTTTCTGCAGTTTCCCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtttttaatctgcaggattaatctctggttctcttttgttgaatgttcagaGAGGATCTAGCACGCATATATACAGCTGAGATTGTTTCTGCAGTTTCCCATCTCCATGCAAATGGAATAATGCATAGGGATCTAAAGCCTGAAAATATCC
                   gattaat  putative branch site (score: 3)
     tttttaatct  TA-rich tract