1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaccatcaaaaaccttgttaatacaaccttgttaactgattttctactttatgaacttttttttgtggtctttgacatagagccttaatctgtttccagcTTGGACAAAAATCTATTAATGAAACAGCTCTCCTTTACGCACCCCACGAATTTCTGCCTTGGGTGATGGTAAACAATCAATCTATTGGAAAGG
species | Glycine max |
transcript | GLYMA18G43600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCCGAGGAACCTATTCTGAGCTGTTATAACAGAGGAAATGGAACAGAGC TTGGACAAAAATCTATTAATGAAACAGCTCTCCTTTACGCACCCCACGAATEST: gi|208177447|gb|GD973956.1|GD973956
genomic: GCCCGAGGAACCTATTCTGAGCTGCTATAACAGAGGAAATGGAACAGAGGttactgtaca ... tgtttccagcTTGGACAAAAATCTATTAATGAAACAGCTCTCCTTTACGCACCCCACGAAT
EST: GCCCGAGGAACCTATTCTGAGCTGCTATAACAGAGGAAATGGAACAGAGC TTGGACAAAAATCTATTAATGAAACAGCTCTCCTTTACGCACCCCACGAAT
genomic: GCCCGAGGAACCTATTCTGAGCTGCTATAACAGAGGAAATGGAACAGAGGttactgtaca ... tgtttccagcTTGGACAAAAATCTATTAATGAAACAGCTCTCCTTTACGCACCCCACGAAT
actttatgaacttttttttgtggtctttgacatagagccttaatctgtttccagcTTGGACAAAAATCTATTAATGAAACAGCTCTCCTTTACGCACCCCACGAATTTCTGCCTTGGGTGATGGTAAACAATCAATCTATTGGAAAGG
ccttaat putative branch site (score: 4)
tctgtttcc CT-rich tract
atgaactttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccatcaaaaaccttgttaatacaaccttgttaactgattttctactttatgaacttttttttgtggtctttgacatagagccttaatctgtttccagcTTGGACAAAAATCTATTAATGAAACAGCTCTCCTTTACGCACCCCACGAATTTCTGCCTTGGGTGATGGTAAACAATCAATCTATTGGAAAGG
- ccatcaa
- - - - - - - - - - - acaacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccttaa