Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtattttgttttccacaccaaacttgttcatccagtgccaataaaacctttttttacctttgttcactgcttgcacaaatgggattttttttcccttctaattattgtagctgcaaaagtttgacacaaataataaatgatttgttaGAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACA

Basic information

species Glycine max
transcript GLYMA18G43040.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312023|gb|FK004276.1|FK004276
EST:     CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAA                         GAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
genomic: CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAAggtattttgt ... tgatttgttaGAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
EST: gi|192325819|gb|FK018041.1|FK018041
EST:     CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAA                         GAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
genomic: CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAAggtattttgt ... tgatttgttaGAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
EST: gi|33390678|gb|CA853873.1|CA853873
EST:     CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAA                         GAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
genomic: CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAAggtattttgt ... tgatttgttaGAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
EST: gi|8282632|gb|BE020193.1|BE020193
EST:     CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAA                         GAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
genomic: CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAAggtattttgt ... tgatttgttaGAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
EST: gi|15662576|gb|BI699955.1|BI699955
EST:     CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAA                         GAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
genomic: CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAAggtattttgt ... tgatttgttaGAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
EST: gi|8283486|gb|BE021045.1|BE021045
EST:     CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAA                         GAGCCTCTCAGAGAACACTCGCATTCTACTTCT-AGTGCTCCTCCCATCAA
genomic: CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAAggtattttgt ... tgatttgttaGAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
EST: gi|192325175|gb|FK017546.1|FK017546
EST:     CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAA                         GAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
genomic: CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAAggtattttgt ... tgatttgttaGAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
EST: gi|192312022|gb|FK004275.1|FK004275
EST:     CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAA                         GAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA
genomic: CCTCTCCAAGAATACATTGAAAATTTGAGGAAGATTGTTAACCATCTCAAggtattttgt ... tgatttgttaGAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttctaattattgtagctgcaaaagtttgacacaaataataaatgatttgttaGAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACA
                                 acaaataataaatgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtattttgttttccacaccaaacttgttcatccagtgccaataaaacctttttttacctttgttcactgcttgcacaaatgggattttttttcccttctaattattgtagctgcaaaagtttgacacaaataataaatgatttgttaGAGCCTCTCAGAGAACACTCGCATTCTACTTCTCAGTGCTCCTCCCATCAATGATGCAACAATTACCCCAAACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC