Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaagaattcttccttaaatttgtgtagacttttttttatttctatttatttactgtttcttaatttcattaaatgtccaagttaaatttatcaattgtacaactagaaaataagttaaaccattctagtgaacttatgcaactgattttattttggtgcagTGGATCTTCTGGGTAGGGCCTTTTATTGGGGCAGCACTTGCAGCTTTATACCATCAGATAGTGCTCAGGGCCATTCCTTTCAAGTCAAAATAA

Basic information

species Glycine max
transcript GLYMA18G42630.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G42630.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ18960 (Selaginella moellendorffii), 3'ss of exon 3
gtgagaaagaattcttccttaaatttgtgtagacttttttttatttctatttatttactgtttcttaatttcattaaatgtccaagttaaatttatcaattgtacaactagaaaataagttaaaccattctagtgaacttatgcaactgattttattttggtgcagTGGATCTTCTGGGTAGGGCCTTTTATTGGGGCAGCACTTGCAGCTTTATACCATCAGATAGTGCTCAGGGCCATTCCTTTCAAGTCAAAATAA-------
                                                                                   ||| | | ||||    ||| |    | |    |   ||||    |||||      |  |||| |    | | | |    |||||||||||||||||| || ||| | ||||| ||||| |||||||| || ||||| ||| | ||  |  | |||||||||||| | | | ||  |       
---------------------------------------------------------------------------------gtaagatcactttactctttgaatttttcgctcttcttttaag---ttctaacttgttggtgcatcg---tctgtgtgtaagcagTGGATCTTCTGGGTCGGTCCTCTGATTGGAGCAGCCCTTGCAGCCTTCTACCACCAGTTCGTCATTCGTGCCATTCCTTTCCACTAAGAAAGAAAAAGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237698|gb|BE806586.1|BE806586
EST:     GTTTAGGTGCAGCCCTTGTATACAACAAGGACCAAGCTTGGGATAACCAT                         TGGATCTTCTGGGTAGGGCCTTTTATTGGGGCAGCACTTGCAGCTTTATAC
genomic: GTTTAGGTGCAGCCCTTGTATACAACAAGGACCAAGCTTGGGATAACCATgtgagaaaga ... tttggtgcagTGGATCTTCTGGGTAGGGCCTTTTATTGGGGCAGCACTTGCAGCTTTATAC
EST: gi|31459087|gb|CD401115.1|CD401115
EST:     GTTTAGGTGCAGCCCTTGTATACAACAAGGACCAAGCTTGGGATAACCAT                         TGGATCTTCTGGGTAGGGCCTTTTATTGGGGCAGCACTTGCAGCTTTATAC
genomic: GTTTAGGTGCAGCCCTTGTATACAACAAGGACCAAGCTTGGGATAACCATgtgagaaaga ... tttggtgcagTGGATCTTCTGGGTAGGGCCTTTTATTGGGGCAGCACTTGCAGCTTTATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaataagttaaaccattctagtgaacttatgcaactgattttattttggtgcagTGGATCTTCTGGGTAGGGCCTTTTATTGGGGCAGCACTTGCAGCTTTATACCATCAGATAGTGCTCAGGGCCATTCCTTTCAAGTCAAAATAA
                                 aactgat  putative branch site (score: 3)
                                       ttttatttt  CT-rich tract
                                 aactgattttatttt  TA-rich tract