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...tagcctttttgcattgtctatgtattttccaacaactagcatgcccatatgttttatactaacaattttcttttataccaaaaacaattgagaaatgcagCTTTCCCTGCCCTTTGTATCAGAAGGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCGGAGGTAGCCCGGTTTAAGCCTGACATAATACATGCA
species | Glycine max |
transcript | GLYMA18G42540.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAGTGCCACAGGAATTTTATGGAGCCAAATTAATTGGATCTTGGAG CTTTCCCTGCCCTTTGTATCAGAAGGTACCCCTCTCCTTGGCACTTAGTCCEST: gi|120491418|gb|EH219585.1|EH219585
genomic: GAAGGAGTGCCACAGGAATTTTATGGAGCCAAATTAATTGGATCTTGGAGgttgctaaca ... agaaatgcagCTTTCCCTGCCCTTTGTATCAGAAGGTACCCCTCTCCTTGGCACTTAGTCC
EST: GAAGGAGTGCCACAGGAATTTTATGGAGCCAAATTAATTGGATCTTGGAG CTTTCCCTGCCCTTTGTATCAGAAGGTACCCCTCTCCTTGGCACTTAGTCC
genomic: GAAGGAGTGCCACAGGAATTTTATGGAGCCAAATTAATTGGATCTTGGAGgttgctaaca ... agaaatgcagCTTTCCCTGCCCTTTGTATCAGAAGGTACCCCTCTCCTTGGCACTTAGTCC
catatgttttatactaacaattttcttttataccaaaaacaattgagaaatgcagCTTTCCCTGCCCTTTGTATCAGAAGGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCGGAGGTAGCCCGGTTTAAGCCTGACATAATACATGCA
tactaac putative branch site (score: 0)
ttttatactaacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcctttttgcattgtctatgtattttccaacaactagcatgcccatatgttttatactaacaattttcttttataccaaaaacaattgagaaatgcagCTTTCCCTGCCCTTTGTATCAGAAGGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCGGAGGTAGCCCGGTTTAAGCCTGACATAATACATGCA
- gcctttt
- - - - -tgcattg
- - - - - - - - -ctatgta
- - - - - - - - - - - - - - ccaacaa
- - - - - - - - - - - - - - - - - - - -catgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa