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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatctatttcttctttccatgaatcatagattgctatacaaacttatacatgcttgtgatattgaaattattttctatatgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG

Basic information

species Glycine max
transcript GLYMA18G39930.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G39930.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g60740.1 (Oryza sativa), 3'ss of exon 3
gtgagaatctatttcttctttccatgaatcatagattgctatacaaacttatacatgcttgtgatattgaaattattttctatatgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG
  |  |   | || ||| ||    |  |||||  ||     ||  |  || || ||| |||| |  |  | |||  ||  | ||     ||||| || ||||||||||||||||| || ||| | || || || ||||| |||||| ||| |||||||||  |||||||| | || ||||| |||||||||
--gtaaggttgttgcttattcttcttcatcattcat----gtatcagtttgtaaatgtttgttaagtgaacattgcttgtttta-----acagCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAATCCTAACCATCCACTGAACAGCCTAGGCAATGGCAATATACTG

upper sequence: GLYMA18G39930.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G068244_T01 (Zea mays), 3'ss of exon 3
----gtgagaatc-----tatttcttctttccatgaatcatagattgct-atacaaacttatacatgcttgtgatattgaa-attattttcta--tatgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG
    |||  |||       | |  |||  |   ||  |  | | | ||| |||         || |   ||  ||| |||   ||| |||  |  ||| |   ||||||| ||||||||||||||||| |||||| | || || |||||||| |||||| ||| |||||||||  |||||||| |||||||||| |||||||||
gtatgtgttaattctgctcagtgtttcactttctggttttttggtagctcatatttttcagaacgtaaatgaaataatgattgttaatttggacctatattggcagCTAAAGCTGCTGGAGTGAAGCATATTGTGCTGGTGGGATCTATGGGAGGAACAAATCCTAACCATCCGCTGAACAGCATGGGTAATGGCAATATACTG

upper sequence: GLYMA18G39930.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g00530.t01 (Vitis vinifera), 3'ss of exon 3
gtgagaatctatttct-tctttcca--tgaatcatagattgctatacaaacttatacatgcttgtgatattgaa--------attattttctatatgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG
|||||| | | ||||| || |   |      | ||  |||  | | |||   |||    |||| || |||||||        || || || |  || |  ||||| ||  |||| ||||||||||| |||||||| || ||||||||||| |||||||| || |||||||| |||||||||||||| ||||||||||| |||
gtgagattttctttctgtcatattaatcaggttatgtatttattttcaa---tatgttcgctt-tggtattgaatggcctgaatcatattatccatatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAACAGACCTAAACCATCCCTTGAACAGCTTGGGAAATGGGAATATCCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208333137|gb|GE127414.1|GE127414
EST:     TCGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|58019799|gb|CX706541.1|CX706541
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|193429904|gb|FK395552.1|FK395552
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGGTGGA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGG-TGGA
EST: gi|213620500|gb|DB957344.1|DB957344
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|193333926|gb|FK301314.1|FK301314
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGT
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGT
EST: gi|207782942|gb|GD754527.1|GD754527
EST:     TTGACTGGATTGTGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|193320346|gb|FK283991.1|FK283991
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGT
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGT
EST: gi|193443566|gb|FK409256.1|FK409256
EST:     ACTGGATTGGGCAGAAAAATCAAATAGATGTCG                         CCAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: ACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|193436041|gb|FK401157.1|FK401157
EST:     TTGACTGGATTGGGCAGAAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAG-AAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|151397652|gb|EV267525.1|EV267525
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|17023106|gb|BM094140.1|BM094140
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|207820378|gb|GD792832.1|GD792832
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|298174286|gb|HO017622.1|HO017622
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGTTGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAG
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|193726451|gb|FK661137.1|FK661137
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|58022869|gb|CX709610.1|CX709610
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|193349121|gb|FK315299.1|FK315299
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTTGTTAGTAGGGTCTATGGGTGGA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGT-GTTAGTAGGGTCTATGGGTGGA
EST: gi|208073385|gb|GD867302.1|GD867302
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|192327079|gb|FK015471.1|FK015471
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGGA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGG-A
EST: gi|58016336|gb|CX703078.1|CX703078
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|193415735|gb|FK381437.1|FK381437
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|193354431|gb|FK321179.1|FK321179
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|208110158|gb|GD907246.1|GD907246
EST:     ATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: ATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|8825861|gb|BE209591.1|BE209591
EST:     GGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: GGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|193436727|gb|FK399528.1|FK399528
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|58019388|gb|CX706130.1|CX706130
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
EST: gi|7028397|gb|AW458180.1|AW458180
EST:     TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCG                         CTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA
genomic: TTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGgtgagaatct ... atgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatacaaacttatacatgcttgtgatattgaaattattttctatatgtgaacagCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTG
                    ttgtgatattgaaatt  TA-rich tract