1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
tgcttaataaatttctcatttgcaactgagtgtttcaaaaggaaagatcatgcttttaaaagcaacctactgacaatcaagattttcttttcatgtgaagcTAGCAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTTGGAATTCTCCCACACGTGGACAATTTTGCTCATATTGGAGGCTTTCTTAC
species | Glycine max |
transcript | GLYMA18G25760.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGC TAGCAGCACTCCTCACCCTTGTGATCATCATEST: gi|193535672|gb|FK493518.1|FK493518
genomic: AGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGGtgcttaataa ... catgtgaagcTAGCAGCACTCCTCACCCTTGTGATCATCAT
EST: AGGCATGCTTTCAGAACTCATTACTAACTGGTCTGTATATGATAACAAGC TAGCAGCACTCCTCACCCTTGTGATCATCAEST: gi|298165603|gb|HO011652.1|HO011652
genomic: AGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGGtgcttaataa ... catgtgaagcTAGCAGCACTCCTCACCCTTGTGATCATCA
EST: AGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGC TAGCAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTTG
genomic: AGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGGtgcttaataa ... catgtgaagcTAGCAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTTG
atcatgcttttaaaagcaacctactgacaatcaagattttcttttcatgtgaagcTAGCAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTTGGAATTCTCCCACACGTGGACAATTTTGCTCATATTGGAGGCTTTCTTAC
tactgac putative branch site (score: 1)
ttttcttttcatgt putative PPT
attttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttaataaatttctcatttgcaactgagtgtttcaaaaggaaagatcatgcttttaaaagcaacctactgacaatcaagattttcttttcatgtgaagcTAGCAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTTGGAATTCTCCCACACGTGGACAATTTTGCTCATATTGGAGGCTTTCTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG