Sequence
atgc intronic sequence ATGC exonic sequence...taattttaaaataaatgtgaattgtgcttgataaatttaatttttgttttggtcaatttttaactgtctataaatgggacactttttaatgtgtttctagAGAGGCTTTGTTGAAGCACAAGTTGATGATGGACTTTTAGAAATATTTGGTCTAAAACAAGGATGGCATGCATCATTTGTCATGAGTGAACTTATTTCTG
Basic information
species | Glycine max |
transcript | GLYMA18G22370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G22370.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G073380_T01 (Zea mays), 3'ss of exon 4
-----------------taattttaaaataaatg---tgaattgtgcttgataaatttaatttttgtt----ttggtcaatt--tttaactgtctataaatgg-gacactttttaatgtgtttctagAGAGGCTTTGTTGAAGCACAAGTTGATGATGGACTTTTAGAAATATTTGGTCTAAAACAAGGATGGCATGCATCATTTGTCATGAGTGAACTTATTTCTG
| || | | || || | ||||| | ||| || | || || | | | |||||| |||| | | | | || | | | ||| |||||||| ||||||||||| ||| |||||||| ||| | || |||||||| || || ||||| ||||||||||| | || ||| ||||||||| ||||
gtgtgttgagtaaaaatttatgtgaccattcatcacctcaattgcattaattaacattgacttctgataaactcgttcaattgcattaattaacattgtcttctgataaactcgtttatgtcaatagAGAGGATTTGTTGAAGCCCAATCAGATGATGGTCTTCTTGAGATATTTGGACTGAAGCAAGGGTGGCATGCATCTCTCGTGATGGTTGAACTTATATCTG
upper sequence: GLYMA18G22370.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0052g01840.t01 (Vitis vinifera), 3'ss of exon 10
-taattttaaaataaatgtgaattgtgcttgataaatttaatttttgttttggtcaatttttaactgtctataaatgggacactttttaatgtgt---ttctagAGAGGCTTTGTTGAAGCACAAGTTGATGATGGACTTTTAGAAATATTTGGTCTAAAACAAGGATGGCATGCATCATTTGTCATGAGTGAACTTATTTCTG
| ||||| | ||| | | || || ||| | | | | |||| | || | | |||| | ||| | || ||| ||| |||||||| || || || |||||||| ||| ||||||| ||||| ||||| || ||||||||||| |||||||| ||| ||||| || ||||
gaatttttatggcttagctgattaatcttt--tacttttgagagagaatgt--tgaattccaagttgaagctggtttccttgattttgattgtttacttttcagAAAGGTTTTGTTGAGGCTCATGTCGATGATGGGCTTCTAGAAATTTTTGGCCTAAAGCAGGGATGGCATGCTTCATTTGTAATGGTGGAACTCATCTCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttggtcaatttttaactgtctataaatgggacactttttaatgtgtttctagAGAGGCTTTGTTGAAGCACAAGTTGATGATGGACTTTTAGAAATATTTGGTCTAAAACAAGGATGGCATGCATCATTTGTCATGAGTGAACTTATTTCTG
tgtttct CT-rich tract
aatttttaactgtcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taattttaaaataaatgtgaattgtgcttgataaatttaatttttgttttggtcaatttttaactgtctataaatgggacactttttaatgtgtttctagAGAGGCTTTGTTGAAGCACAAGTTGATGATGGACTTTTAGAAATATTTGGTCTAAAACAAGGATGGCATGCATCATTTGTCATGAGTGAACTTATTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - -aaaataa
- - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtcta