1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgatagtactcctgatttccttattgcttagagtatcttacattgaaatttttttactcacctgagcctaattatttttatacctatgtgattgtactagATTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACT
species | Glycine max |
transcript | GLYMA18G19670.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATTGTCCCTTTAAACCACACAGTAGGGAGCCCAAGTCCCCCACTGCCG ATTCAAAAGTGAGATGGEST: gi|208323735|gb|GE122306.1|GE122306
genomic: TCATTGTCCCTTTAAACCACACAGTAGGGAGCCCAAGTCCCCCACTGCCGgtaattgtta ... attgtactagATTCAAA-GTGAGATGG
EST: TCATTGTCCCTTTAAACCACACAGTAGGGAGCCCAAGTCCCCCACTGCCG ATTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACT
genomic: TCATTGTCCCTTTAAACCACACAGTAGGGAGCCCAAGTCCCCCACTGCCGgtaattgtta ... attgtactagATTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACT
aaatttttttactcacctgagcctaattatttttatacctatgtgattgtactagATTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACT
taattatttttatacc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatagtactcctgatttccttattgcttagagtatcttacattgaaatttttttactcacctgagcctaattatttttatacctatgtgattgtactagATTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - ctcctga
- - - - - - - - - - - - tgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctatgt