1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cctgcatatctcaaatacaaaggaggcatcaaattaaaattttatttattaagctggttctgaatggaagtctagttctgaatggcatgttctctgtgcaGGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCAGCTTATTCGGCAAATATGTGGAATGAAGCATTGAATAAGCGGTTAGGGACTGA
species | Glycine max |
transcript | GLYMA18G17350.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGATTGACACTGTAGCAGACAACTATCCTCCACCTCTTGATGCTCACTT GGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCAGCTTATTCGGCEST: gi|51338359|gb|CO982225.1|CO982225
genomic: TGGATTGACACTGTAGCAGACAACTATCCTCCACCTCTTGATGCTCACTTggtagaaaac ... tctctgtgcaGGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCAGCTTATTCGGC
EST: TGGATTGACACTGTAGCAGACAACTATCCTCCACCTCTTGATGCTCACTT GGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCAGCTTATTCGGCEST: gi|120495608|gb|EH223775.1|EH223775
genomic: TGGATTGACACTGTAGCAGACAACTATCCTCCACCTCTTGATGCTCACTTggtagaaaac ... tctctgtgcaGGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCAGCTTATTCGGC
EST: TGGATTGACACTGTAGCAGACAACTATCCTCCACCTCTTGATGCTCACTT GGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCAGCTTATTCGGCEST: gi|254318885|gb|GR828721.1|GR828721
genomic: TGGATTGACACTGTAGCAGACAACTATCCTCCACCTCTTGATGCTCACTTggtagaaaac ... tctctgtgcaGGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCAGCTTATTCGGC
EST: GCAGACAACTATCCTCCCACCTCTTGATGCTCACTT GGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCAGCTTATTCGGC
genomic: GCAGACAACTATCCT-CCACCTCTTGATGCTCACTTggtagaaaac ... tctctgtgcaGGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCAGCTTATTCGGC
ttattaagctggttctgaatggaagtctagttctgaatggcatgttctctgtgcaGGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCAGCTTATTCGGCAAATATGTGGAATGAAGCATTGAATAAGCGGTTAGGGACTGA
tgttctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgcatatctcaaatacaaaggaggcatcaaattaaaattttatttattaagctggttctgaatggaagtctagttctgaatggcatgttctctgtgcaGGTAATTTCTGTCATGTCTATGTGGACTAGATTGCAGCCAGCTTATTCGGCAAATATGTGGAATGAAGCATTGAATAAGCGGTTAGGGACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- tgcatat
- - - - - - - - - - - - - - - aaattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcatg