Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtttgtttttctcaattttcttagtctactatgcttaattttcattgtgcaaattagtggagtaccttgcttacttttgtctctggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCTTGAAGATCCAAAAGACAAAGGAAAAACAAGCTTTGAAGGGCTGAGTTTT

Basic information

species Glycine max
transcript GLYMA18G14980.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os09g24690.1 (Oryza sativa), 3'ss of exon 3
ggtttgtttttctcaatttt-cttagtctactatgcttaattttcattgtgcaaattagtggagtaccttgcttacttttgtctctggt-tctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCTTGAAGATCCAAAAGACAAAGGAAAAACAAGCTTTGAAG-GGCTGAGTTTT
            |||   |  | |  || |  ||    |  ||| ||| |   ||   ||    |   |  | |    |  |   |  |  ||   || |||||||| |||||||||||||||||||| ||||||||||| || |||||||| || || || || ||||| ||   ||| |  |||  |   | | ||
-----------gtcagcataacatgctccaacatatccacatttgattat---aacatgtatcttctgtcacctcacatgattcatattgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTT

upper sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
ggtttgtttttctcaattttcttagtctactatgcttaattttcattgtgcaaattagtggagtaccttgcttacttttgtctctggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCTTGAAGATCCAAAAGACAAAGGAAAAACAAGCTTTGAAGGGCTGAGTTTT---
            | ||   ||  |    | ||        |||| |      | || ||| |  |   |             ||||   ||   || ||||| || ||||| ||||| || ||||| ||||||||||| ||||| ||||||||||| ||||| ||||| ||   ||||   || |  ||     |   
-----------gtaaaccatccaaacacattacatgctcctttcttgcgatcagttggtgaaccaatcta------------tctgcacctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCT--AAATGATTGCAAGATAGA

upper sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G152552_T01 (Zea mays), 3'ss of exon 3
ggtttgtttttctcaatttt-cttagtctactatgcttaattttcattgtgcaaattagtggagtaccttgcttacttttgtctctggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCTTGAAGATCCAAAAGACAAAGGAAAAACAAGCTTTGAAGGGCTGAGTTTT----
 ||  ||   |      |   | || | |  | ||     |     || || || || || |     |||    | |       |||  | ||  ||||||||||| ||||||||||| || ||||| |||||||| || |||||| |||| || ||||| || ||||| ||   ||||   |||   | | | |     
-gtgagtaaatagggggtggacatattgtggtgtgga-ggtccaggttctgtaatttcgtag----tcttatgaattacaactactg--tatgc-agAATCATTCGTGCTTTCTTGGTCGAGGAGCAGAAGATTGTCAAGAAGGTCCTGAAAATACAAAAAACCAAGGACAAGACAGCTGCAAAG---TAAATCTCCAGG

upper sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 3
ggtttgtttttctcaattttcttagtctactatgcttaattttcattgtgcaaattagtggagtaccttgcttacttttgtctctggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCTTGAAGATCCAAAAGACAAAGGAAAAACAAGCTTTGAAGGGCTGAGTTTT----
         |  |||  ||  || |  | | ||||||   | |     ||   |||  | ||| | ||    | |        ||         || ||||| || || || ||||| || || || ||||| ||||| ||||| ||||||||||||||||| ||||| ||    || |  ||| |||      |    
--------gtgatca--ttctttcgcatcccatgcttgcctgtttaaatg---attgtttgagaaactaatctgcccgcacgcct--------cagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTTGAAGATCCAAAAGACCAAGGATAAG---GCCTCCAAGAGCTAGACGATATAG

upper sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G166963_T01 (Zea mays), 3'ss of exon 3
---ggtttgtttttctcaattttcttagtctactatgcttaattttcattgtgcaaattagtggagtaccttgcttacttttgtctctggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCTTGAAGATCCAAAAGACAAAGGAAAAACAAGCTTTGAAGGGCTGAGTTTT-
    |    |  ||  ||  | | ||  | |  ||  | |||      |||   |  |   || |   ||   | |  |||   | |||  |||   || ||||| || |||||| ||||||||||||| |||||||| || ||||| |||||  | || ||||| || || ||     | |  ||    | | | |  
gttagcaaatagtttccatatattttgatttgataaccctaaa----gttgcaaacctctatgtaac-ccccacatgttttca-cactg--tcttgcagGATCATCCGTGCTTTCCTGGTTGAAGAGCAGAAGATTGTCAAGAAGGTGTTGAAATTACAGAAGACCAAAGACAAGACTTCCTCAAAAAAGTAACTCTGA

upper sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G820996_T01 (Zea mays), 3'ss of exon 3
ggtttgtttttctcaattttcttagtctactatgcttaattttcattgtgcaaattagtggagtaccttgcttacttttgt-ctctggttctgt-taGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCTTGAAGATCCAAAAGACAAAGGAAAAACAAGCTTTGAAGGGCTGAGTTTT---
            | | |      || |    ||  |   || | |  |  ||      |     | ||||    ||| ||  ||     ||| | |||||| || || |||||||||||||| ||||| |||||||| || |||||| |||| || || || || ||||| ||   ||||   |||    ||| |     
-----------gtgagtaaatagaggcgggcatattgtgttgtgaaagcccagg---atctgtcatcttgtaatcttatgagctactactctatgtagAATTATCCGTGCTTTCTTGGTTGAGGAGCAGAAGATTGTCAAGAAGGTCCTGAAAATACAGAAAACCAAGGACAAGACAGCTGCAAAGTA--GAGCTCCAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324249|gb|FK018220.1|FK018220
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|31472602|gb|CD414630.1|CD414630
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|213590394|gb|DB968028.1|DB968028
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTTGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|11274382|gb|BF324735.1|BF324735
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|7685487|gb|AW756135.1|AW756135
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|7146956|gb|AW508878.1|AW508878
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|208201530|gb|GE000094.1|GE000094
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|254325254|gb|GR838135.1|GR838135
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|298176065|gb|HO015470.1|HO015470
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|18718644|gb|BM523090.1|BM523090
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|17963082|gb|BM269835.1|BM269835
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|192323954|gb|FK018660.1|FK018660
EST:     TGTGAACCGTGCATATGGTGGTGCGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTG
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTG
EST: gi|16996633|gb|BM086005.1|BM086005
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|6070755|gb|AW100142.1|AW100142
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|23731555|gb|BU763908.1|BU763908
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|6133935|gb|AW132328.1|AW132328
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|193519584|gb|FK477085.1|FK477085
EST:     TGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|12773856|gb|BG238783.1|BG238783
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|17963817|gb|BM270562.1|BM270562
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|31561268|gb|CD487106.1|CD487106
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|151396615|gb|EV266492.1|EV266492
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTT
EST: gi|12772023|gb|BG236950.1|BG236950
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|7284864|gb|AW597351.1|AW597351
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|151398873|gb|EV268744.1|EV268744
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|18039938|gb|BM308232.1|BM308232
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|9203390|gb|BE329676.1|BE329676
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|15664951|gb|BI702322.1|BI702322
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|5820258|gb|AI988464.1|AI988464
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|21675878|gb|BQ628229.1|BQ628229
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|192323636|gb|FK015942.1|FK015942
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGCCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|193511106|gb|FK468977.1|FK468977
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCGTTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGT
EST: gi|31472178|gb|CD414206.1|CD414206
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCCAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|46492678|gb|CN472234.1|CN472234
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|9564242|gb|BE473751.1|BE473751
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|298190246|gb|HO032367.1|HO032367
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|31474872|gb|CD416900.1|CD416900
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|151397803|gb|EV267676.1|EV267676
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|15000552|gb|BI321366.1|BI321366
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|31460226|gb|CD402194.1|CD402194
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|192299687|gb|FG987761.1|FG987761
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|58024477|gb|CX711218.1|CX711218
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|7146199|gb|AW508184.1|AW508184
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|31560902|gb|CD486740.1|CD486740
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|26268191|gb|CA819254.1|CA819254
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|16280942|gb|BI944228.1|BI944228
EST:     GTGAACCGTGCATATGGTGGTGTGGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTT
genomic: GTGAACCGTGCATATGGTGGTGTG-TTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTT
EST: gi|31308462|gb|CD393665.1|CD393665
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCTAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|18041382|gb|BM309676.1|BM309676
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|254344878|gb|GR851361.1|GR851361
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTT-CAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCATAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|4301547|gb|AI443206.1|AI443206
EST:     TGTGA-CCGTGCATATGGTGGTGTGT-GTCTGGCAGTGCTGTTAGAGAAA                         GA-TCATTCGAGC
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGC
EST: gi|7029640|gb|AW459357.1|AW459357
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|7232405|gb|AW567761.1|AW567761
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|12773537|gb|BG238464.1|BG238464
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|16997137|gb|BM086509.1|BM086509
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|298181558|gb|HO025733.1|HO025733
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAGTCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|208079758|gb|GD875414.1|GD875414
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|213597650|gb|DB962560.1|DB962560
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|11413995|gb|BF425935.1|BF425935
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|4396238|gb|AI495235.1|AI495235
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|7234593|gb|AW569929.1|AW569929
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|151411402|gb|EV281213.1|EV281213
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|31463280|gb|CD405308.1|CD405308
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|31470212|gb|CD412360.1|CD412360
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|207749838|gb|GD718162.1|GD718162
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
EST: gi|192331783|gb|FK024887.1|FK024887
EST:     TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAA                         GAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT
genomic: TGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAAAggtttgtttt ... ggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcattgtgcaaattagtggagtaccttgcttacttttgtctctggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCTTGAAGATCCAAAAGACAAAGGAAAAACAAGCTTTGAAGGGCTGAGTTTT
                            tgcttac  putative branch site (score: 2)
                                               ttctgtt  putative PPT
           aaattagt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtttgtttttctcaattttcttagtctactatgcttaattttcattgtgcaaattagtggagtaccttgcttacttttgtctctggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCTTGAAGATCCAAAAGACAAAGGAAAAACAAGCTTTGAAGGGCTGAGTTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG