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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcctctaacaaaatcctaggtattggtctttctaaaacattactccgtattatatttttttccccaagttataacaagaaccaggagaaatttacaagaccttgtattcattttgaaattgcagCCATGTACTCACTTTGCTCGTCAGTCTTGCATGAAAGGGGATGATTGCCCATTTGATCACCAGCTTTCAAAATATCCTTGTACCAATTTTGTGTCCAAAG

Basic information

species Glycine max
transcript GLYMA18G10310.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10310.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0016g02020.t01 (Vitis vinifera), 3'ss of exon 6
gtgcctctaacaaaatcctaggtattggtctttctaaaacattactccgtattatatttttttccccaagttataacaagaaccaggagaaatttacaagaccttgtattcattttgaaattgcagCCATGTACTCACTTTGCTCGTCAGTCTTGCATGAAAGGGGATGATTGCCCATTTGATCACCAGCTTTCAAAATATCCTTGTACCAATTTTGTGTCCAAAG
  | |  | ||| ||| | | |||     |      |||   | ||        |||  || | |   | ||||          ||||   | |  |     ||  |   |||||||   || ||||| ||   ||| ||||| |||    | ||||||||||||||||| || ||||||||||| ||||| || || ||||| ||||  |||| ||| || ||||
--gtccatcacacaattc-aagtacaacac------aaatgatgct--------tatcattcttcttgaattattg--------aggacttactccctctctctcatgc-cattttggtgttacagCCTTGCTGTCATTTTGCACGTGGTACCTGCATGAAAGGGGATGACTGTCCATTTGATCATCAGCTGTCCAACTATCCCTGTAATAATTATGTCTCAAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataacaagaaccaggagaaatttacaagaccttgtattcattttgaaattgcagCCATGTACTCACTTTGCTCGTCAGTCTTGCATGAAAGGGGATGATTGCCCATTTGATCACCAGCTTTCAAAATATCCTTGTACCAATTTTGTGTCCAAAG
 ttataac  putative branch site (score: 2)
                                   tattcattttgaaatt  TA-rich tract