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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtattactatgagtttgcttgattaatttccacattttttctttcttcttaattttaatcagtggttagatttggttgtgttccaatagaagaaaagggggtatctagagagatgtgaatttcatgaagtggttcatgattatgtgtctttatgcctttatgtcaGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTT

Basic information

species Glycine max
transcript GLYMA18G06950.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193712128|gb|FK648381.1|FK648381
EST:     TTGAGAAGGATGAATCATGGGTTCC                         GCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAG
genomic: TTGAGAAGGATGAATCATGGGTTCCggtattacta ... ctttatgtcaGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAG
EST: gi|193495996|gb|FK461936.1|FK461936
EST:     CAGAACCATGGTCCATTGTTTGAGAAGGATGAATCATGGGTTCC                         GCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAG
genomic: CAGAACCATGG-CCA-TG-TTGAGAAGGATGAATCATGGGTTCCggtattacta ... ctttatgtcaGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAG
EST: gi|193557934|gb|FK515817.1|FK515817
EST:     ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCC                         GCTTACAGAGAAAGTTTAC
genomic: ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCggtattacta ... ctttatgtcaGCTTACAGAGAAAGTTTAC
EST: gi|298199350|gb|HO042713.1|HO042713
EST:     ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCC                         GCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAG
genomic: ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCggtattacta ... ctttatgtcaGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAG
EST: gi|208332292|gb|GE129873.1|GE129873
EST:     ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCC                         GCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAA
genomic: ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCggtattacta ... ctttatgtcaGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAA
EST: gi|193364160|gb|FK332206.1|FK332206
EST:     ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCC                         GCTTACAGAGAAAGTTTACAAGAATCTAGACAACATG
genomic: ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCggtattacta ... ctttatgtcaGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATG
EST: gi|208064208|gb|GD864728.1|GD864728
EST:     ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCC                         GCTTACAAGAAGAAAGTTTACAAGAAT
genomic: ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCggtattacta ... ctttatgtcaGCTTACA-GA-GAAAGTTTACAAGAAT
EST: gi|298163003|gb|HO011736.1|HO011736
EST:     ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCC                         GCTTACAGAGAAAG
genomic: ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCggtattacta ... ctttatgtcaGCTTACAGAGAAAG
EST: gi|193567410|gb|FK524181.1|FK524181
EST:     ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCC                         GCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAG
genomic: ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCggtattacta ... ctttatgtcaGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAG
EST: gi|298189099|gb|HO037502.1|HO037502
EST:     ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCC                         GCTTACAGAGAAAGTTTACAAGAATCTAGATAACATGACAAGAATGATGAG
genomic: ACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCggtattacta ... ctttatgtcaGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgtgaatttcatgaagtggttcatgattatgtgtctttatgcctttatgtcaGCTTACAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTT
                                          tgccttt  CT-rich tract
       aatttcat  TA-rich tract