1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ggttagatttagaaaaaaaaaatgtttttttttttcttgctgaagctctatatgtttagcagtgttttgttgcatttcttgaatgcattgtttcaccaattggtttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGTGCTGTATGCTGTGGATCCTGCTTTGCACACGTTAACATTTGAATATGTT
species | Glycine max |
transcript | GLYMA18G06300.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGTEST: gi|151412911|gb|EV282723.1|EV282723
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGTEST: gi|192295996|gb|FG989404.1|FG989404
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGTEST: gi|209704846|gb|BW661676.1|BW661676
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGTEST: gi|14258455|gb|BG881363.1|BG881363
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGTEST: gi|58023446|gb|CX710187.1|CX710187
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGTEST: gi|6719317|gb|AW306964.1|AW306964
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGNGGTTTGTACTCCTGTEST: gi|58025042|gb|CX711783.1|CX711783
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
EST: TACAGGCATCC-ACTTTTGATTCAAAATTGACCCTCAAGCGCTAAAATGC GGAGGCAAGGTGCATGACCAAAGCAA-GCGGACTTGGGGTTTGTACTCCTGEST: gi|192296716|gb|FG991284.1|FG991284
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGC-GACTTGGGGTTTGTACTCCTG
EST: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGC GGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
genomic: TACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCggttagattt ... ttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGT
cagtgttttgttgcatttcttgaatgcattgtttcaccaattggtttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGTGCTGTATGCTGTGGATCCTGCTTTGCACACGTTAACATTTGAATATGTT
ttttt CT-rich tract
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttagatttagaaaaaaaaaatgtttttttttttcttgctgaagctctatatgtttagcagtgttttgttgcatttcttgaatgcattgtttcaccaattggtttttggagcaGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGTGCTGTATGCTGTGGATCCTGCTTTGCACACGTTAACATTTGAATATGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG