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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatacacttcaaaacacttttttttttaatttttcaagagcattgtatattgagtagtatgaaattaatcagagttttaattgattgcgtgtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTGAAGCTCCGTGATGATTATTATGTAATGGACCCTGAAAAGGCCGTGGAAT

Basic information

species Glycine max
transcript GLYMA18G04940.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G04940.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ36644 (Selaginella moellendorffii), 3'ss of exon 3
gtatatacacttcaaaacacttttttttttaatttttcaagagcattgtatattgagtagtatgaaattaatcagagtttt---aattgattgcgtgtttgtga-agGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTGAAGCTCCGTGATGATTATTATGTAATGGACCCTGAAAAGGCCGTGGAAT
                    ||| | ||    ||  ||||     || | | ||| | | | |    ||    ||| |  |   || || |   |   |    | ||||||||||||||||||| ||  | |||||||| |||||| | ||||| ||||||||  |  | ||||| || || ||||| ||  | ||||| |||||  
---------------gttggtttctcttcagtttcgtcaatgaagttttgttttgtgca-tcttttcttggagagaatgctgagaactgttgatgaaatcaccacagGTTTGCTGGGAGAAATTCGCTCGCTACTTTGAAGTGGAGCTCAAGGAAGTGAAGCTGAGCAAGGATTACTACGTGATGGATCCACACAAGGCGGTGGAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595762|gb|DB966205.1|DB966205
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|9899411|gb|BE608379.1|BE608379
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|213606562|gb|DB959016.1|DB959016
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|213588693|gb|DB957578.1|DB957578
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|7588995|gb|AW704779.1|AW704779
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAA
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAA
EST: gi|14205440|gb|BG839118.1|BG839118
EST:     AAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|7588868|gb|AW704654.1|AW704654
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAAGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|6069700|gb|AW099324.1|AW099324
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGNGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|213599238|gb|DB960006.1|DB960006
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTG
EST: gi|17401778|gb|BM178560.1|BM178560
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|9259742|gb|BE347889.1|BE347889
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAA
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAA
EST: gi|213614307|gb|DB956835.1|DB956835
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|209727302|gb|BW663221.1|BW663221
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|209728381|gb|BW652038.1|BW652038
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|5677360|gb|AI938490.1|AI938490
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|15203394|gb|BI426162.1|BI426162
EST:     AGGGAAAGCCTTATGACAAACC-AACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATT-GCAAAGTACTTTGAGGTGGAGTTAAAGGAG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAG
EST: gi|209702090|gb|BW652330.1|BW652330
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|209716269|gb|BW657572.1|BW657572
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|9439731|gb|BE440245.1|BE440245
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|23732463|gb|BU764391.1|BU764391
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGNTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAAGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|213589811|gb|DB959422.1|DB959422
EST:     AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCAAACGTTCAG                         GTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTG
EST: gi|9820626|gb|BE556136.1|BE556136
EST:     AGGGAAAGCCTTATGACANACCCAACATTGTCACTGGAGCCAACGTTCAG                         GTTTGCTGGGAGAAATTTGCA
genomic: AGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatatacac ... gtttgtgaagGTTTGCTGGGAGAAATTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattgagtagtatgaaattaatcagagttttaattgattgcgtgtttgtgaagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTAAAGGAGGTGAAGCTCCGTGATGATTATTATGTAATGGACCCTGAAAAGGCCGTGGAAT
                aaattaatcagagttt  TA-rich tract