1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtcaactttttattctttcatgtttacacaactacattaaaattaaatgtactccaattgcctaaagtgtatggctgtatgcatgtgttttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCCCAATGATGGAACAGAGCAAGCATTACTAAGTGAACTGAGCTCTTTCAA
species | Glycine max |
transcript | GLYMA18G04510.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGANAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|14011388|gb|BG726302.1|BG726302
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: ATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|23064418|gb|BU579191.1|BU579191
genomic: ATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|192322908|gb|FK014839.1|FK014839
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCGAGAGCAAGGATCEST: gi|298177053|gb|HO023414.1|HO023414
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAEST: gi|207764166|gb|GD737981.1|GD737981
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGA
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|13480266|gb|BG509609.1|BG509609
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|151410703|gb|EV280518.1|EV280518
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|23726127|gb|BU761045.1|BU761045
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|209721279|gb|BW665773.1|BW665773
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|298194148|gb|HO040796.1|HO040796
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|9259381|gb|BE347528.1|BE347528
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|298199108|gb|HO042471.1|HO042471
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|117557695|gb|EG702080.1|EG702080
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACACTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|15285066|gb|BI468957.1|BI468957
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|6070095|gb|AW099652.1|AW099652
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|5820109|gb|AI988315.1|AI988315
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|17963072|gb|BM269825.1|BM269825
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|151395906|gb|EV265783.1|EV265783
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|298168940|gb|HO009870.1|HO009870
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCEST: gi|7796708|gb|AW782102.1|AW782102
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
EST: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAG CGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
genomic: AGAGAAGTATCCCAGCCCACCATTGGTGACCCCACCTGAAAGGGCCACAGcgtatgcatt ... ttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATC
aaatgtactccaattgcctaaagtgtatggctgtatgcatgtgttttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCCCAATGATGGAACAGAGCAAGCATTACTAAGTGAACTGAGCTCTTTCAA
gcctaaa putative branch site (score: 3)
ttttatttt putative PPT
atgtgttttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcaactttttattctttcatgtttacacaactacattaaaattaaatgtactccaattgcctaaagtgtatggctgtatgcatgtgttttattttgtaGGGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCCCAATGATGGAACAGAGCAAGCATTACTAAGTGAACTGAGCTCTTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
tgtcaac
- - - - - - - - - tcatgtt
- - - - - - - - - - - - - acacaac
- - - - - - - - - - - - - - - - - - - - - - - aatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgca