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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtatgtactttttgtacacctgcatttgcataattgttttggcactggcagagctgacgtatgcaattctttattgtttgtgttttcttgttccatgaataaaagcatcatcctatgtttagtatatttaataacatcaactgaaactttataccgattccaatattttattcaGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACA

Basic information

species Glycine max
transcript GLYMA18G04160.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15202365|gb|BI425363.1|BI425363
EST:     GCAGATATTGAAAATGGGTTTCCAGGGTTTATACCTGAGAGGCGAGCATT                         GCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGT
genomic: GCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTggtatgtact ... attttattcaGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGT
EST: gi|6481566|gb|AW200837.1|AW200837
EST:     GCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATT                         GCGCGTTCATGCAACACGTCCTAGTAATTCCAATTTCACTCACTTTTCTCG
genomic: GCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTggtatgtact ... attttattcaGCGCGTTCATGCAACACGTCCTAGTAATTCCAATT-CACTCACTTTTCTCG
EST: gi|21255789|gb|BQ452677.1|BQ452677
EST:     GCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATT                         GCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGT
genomic: GCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTggtatgtact ... attttattcaGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGT
EST: gi|58016501|gb|CX703243.1|CX703243
EST:     AAAATGGGTTTTC-GGATTTATACTTGAGAGGCGAGCATT                         GCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGT
genomic: AAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTggtatgtact ... attttattcaGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtatatttaataacatcaactgaaactttataccgattccaatattttattcaGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACA
         taataac  putative branch site (score: 1)
                                              ttttattc  putative PPT
     tatttaataacatcaa  TA-rich tract