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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacatatataaataaataaactgttcccccattttcatttcttgcattgctaagtgttgtgtactcttcattttctaatcatatgaatgttactttgcagGTATTCAATTTTGCAGACCGTTACAGGGGTTCTTATAGTGATTCTCTTAATTCGGTTGTCTGTCCATTCTACTGCTCTTACTCTGGATACCAT

Basic information

species Glycine max
transcript GLYMA18G03470.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03470.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0025g02650.t01 (Vitis vinifera), 3'ss of exon 3
gtaatacatatataaataaataaactgttcccccattttcatttcttgcattgctaagtgt-tgtgtactcttcattttctaatcatat-gaatgttactttgcagGTATTCAATTTTGCAGACCGTTACAGGGGTTCTTATAGTGATTCTCTTAATTCGGTTGTCTGTCCATTCTACTGCTCTTACTCTGGATACCAT
                    |||||   |||| ||||    |   ||  ||| ||   | | | ||||   ||   ||   ||     | || ||| |   ||||||| ||  |||| |||||  | ||||| || ||||| || || ||||| |  ||||| ||||| |||||||||||||| ||||||||||| |||
-------------------gtaaac-actcccacattaatctcctttcaatttcttcctatgtctgtaaattttgattgaaaactgagttgattgtaatgatgcagGTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgctaagtgttgtgtactcttcattttctaatcatatgaatgttactttgcagGTATTCAATTTTGCAGACCGTTACAGGGGTTCTTATAGTGATTCTCTTAATTCGGTTGTCTGTCCATTCTACTGCTCTTACTCTGGATACCAT
                           ttctaat  putative branch site (score: 2)
                                            ttacttt  putative PPT
                        attttctaatcatat  TA-rich tract