1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
tgtaagtaattgcttgttaccaatttgtgttatttattgcagatttgcagctacttccttaataatttcagtttccaattttcaaatgtctaatagtattgtgatgactttgttgcaGAATTTTGCGGAACAATTCTTTTTATGGAATCATCCCTGAAGGAATTGCACACTTGAATGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGG
species | Glycine max |
transcript | GLYMA18G02850.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGAAATCTGATACCTGAGCTTGCAAACCTTGTTCACATAAAATCCA TEST: gi|209711010|gb|BW676407.1|BW676407
genomic: TGAAGGAAATCTGGTACCTGAGCTTGCAAACCTTGTTCACATAAAGTCCAtgtaagtaat ... ctttgttgca-
EST: TGAAGGAAATCTGATACCTGAGCTTGCAAACCTTGTTCACATAAAATCCA TEST: gi|213600836|gb|DB956228.1|DB956228
genomic: TGAAGGAAATCTGGTACCTGAGCTTGCAAACCTTGTTCACATAAAGTCCAtgtaagtaat ... ctttgttgca-
EST: AAACCTTGTTCACATAANA-TCCAT GA-TTTTGCGGAACAATTCTTTTTATGGAATCATCCCTGAAGGEST: gi|213600836|gb|DB956228.1|DB956228
genomic: AAACCTTGTTCACATAA-AGTCCA-tgtaagtaat ... ctttgttgcaGAATTTTGCGGAACAATTCTTTTTATGGAATCATCCCTGAAGG
EST: AAACCTTGTTCACATAANA-TCCAT GA-TTTTGCGGAACAATTCTTTTTATGGAATCATCCCTGAAGG
genomic: AAACCTTGTTCACATAA-AGTCCA-tgtaagtaat ... ctttgttgcaGAATTTTGCGGAACAATTCTTTTTATGGAATCATCCCTGAAGG
taatttcagtttccaattttcaaatgtctaatagtattgtgatgactttgttgcaGAATTTTGCGGAACAATTCTTTTTATGGAATCATCCCTGAAGGAATTGCACACTTGAATGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGG
gtctaat putative branch site (score: 3)
ctttgtt putative PPT
aattttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaagtaattgcttgttaccaatttgtgttatttattgcagatttgcagctacttccttaataatttcagtttccaattttcaaatgtctaatagtattgtgatgactttgttgcaGAATTTTGCGGAACAATTCTTTTTATGGAATCATCCCTGAAGGAATTGCACACTTGAATGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG