1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaatctgtatttaatttggatgtatggcttggattcatactctcttttatgcctatatatggtggaaacaattagggatctaatatggtcaaacatgcagATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTGAGGAAAAAG
species | Glycine max |
transcript | GLYMA18G02430.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGAGAGCCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAG ATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTGEST: gi|254319399|gb|GR830639.1|GR830639
genomic: TGGGAGAGCCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAGgtaagagcat ... aaacatgcagATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTG
EST: TGGGAGAGCCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAG ATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTGEST: gi|254318232|gb|GR832400.1|GR832400
genomic: TGGGAGAGCCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAGgtaagagcat ... aaacatgcagATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTG
EST: TGGGAGAGCCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAG ATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTGEST: gi|209698357|gb|BW678075.1|BW678075
genomic: TGGGAGAGCCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAGgtaagagcat ... aaacatgcagATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTG
EST: TGGGAGAGCCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAG ATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTG
genomic: TGGGAGAGCCTAATAAGTATGACCAAGAAGCTAACAAACCTACTGATAAGgtaagagcat ... aaacatgcagATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTG
tttatgcctatatatggtggaaacaattagggatctaatatggtcaaacatgcagATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTGAGGAAAAAG
atctaat putative branch site (score: 3)
aaacaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatctgtatttaatttggatgtatggcttggattcatactctcttttatgcctatatatggtggaaacaattagggatctaatatggtcaaacatgcagATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGGTTGAGGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT