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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttaatatgttttcctctgttgttgatgaaagttttataaagatggttattggtcagtgatggagtttaaaataatttatttgtctgtctactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCTAAACGATACTTAGAGGATGTTTTGGCCCACAAACAGGCTATTCCTTTCC

Basic information

species Glycine max
transcript GLYMA18G01110.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011275|gb|BG726206.1|BG726206
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|305377802|gb|HO652033.1|HO652033
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|192318954|gb|FK009034.1|FK009034
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|193441154|gb|FK409975.1|FK409975
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|151411461|gb|EV281272.1|EV281272
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|15815139|gb|BI787414.1|BI787414
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|120529639|gb|EH257773.1|EH257773
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|192330707|gb|FK022320.1|FK022320
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|192297172|gb|FG988268.1|FG988268
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|6072248|gb|AW101635.1|AW101635
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|14126219|gb|BG790657.1|BG790657
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|21888291|gb|BQ741504.1|BQ741504
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|209706839|gb|BW653131.1|BW653131
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|16282501|gb|BI945051.1|BI945051
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|151394964|gb|EV264835.1|EV264835
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|17021507|gb|BM092541.1|BM092541
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|298172778|gb|HO020332.1|HO020332
EST:     CCTGCAAGGCCTGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|12772612|gb|BG237466.1|BG237466
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|209706840|gb|BW653132.1|BW653132
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|22540234|gb|BU090077.1|BU090077
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|13788209|gb|BG650801.1|BG650801
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|192298114|gb|FG991394.1|FG991394
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|9258634|gb|BE346781.1|BE346781
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|14259571|gb|BG882479.1|BG882479
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGCTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|192322932|gb|FK016663.1|FK016663
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|192330708|gb|FK022321.1|FK022321
EST:     GAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: GAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|9901461|gb|BE610429.1|BE610429
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|13181069|gb|BG352409.1|BG352409
EST:     CCTGCAA-GCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|37994771|gb|CF806360.1|CF806360
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|208071953|gb|GD867687.1|GD867687
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
EST: gi|6725501|gb|AW309900.1|AW309900
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTTCATTTTAAGgtacttagat ... tactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttattggtcagtgatggagtttaaaataatttatttgtctgtctactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCTAAACGATACTTAGAGGATGTTTTGGCCCACAAACAGGCTATTCCTTTCC
                                           tctacttt  CT-rich tract
               atggagtttaaaataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggttaatatgttttcctctgttgttgatgaaagttttataaagatggttattggtcagtgatggagtttaaaataatttatttgtctgtctactttacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTTGTTAAAGCTAAACGATACTTAGAGGATGTTTTGGCCCACAAACAGGCTATTCCTTTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - -gttgttg
- - - - - - - - - - - - - - - - - - - - - gatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa