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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atacatgcattacaaaggacggacatgtagttatattttgcttcctttaaagctactttaatcattgaatctctttatgtattcattcaccattatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCTCCTTACTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTGCCAC

Basic information

species Glycine max
transcript GLYMA18G00920.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00920.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0010g03700.t01 (Vitis vinifera), 3'ss of exon 3
atacatgcattacaaaggacggacatgtagttatattttgcttcctttaaagctactttaatcattg----aatctctttatgtattcattcaccattat-ccagAAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCTCCTTACTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTGCCAC---
    ||   ||        |  |  |||||  |  ||||| |   ||||  || |   |||  || |    |||  |||| | | |  |       || | ||||||||||||||| |||||| | |||||||| |||||||| |   |||||||||| ||  ||||||||  | | ||||||||||| |||||||| |||||||   
---tataagtttttcttctccaat-tgtagc-actttttgttgattttagggcaatagtaacaatggtgataattactttctatctaaaacattttttttaccagAAATCTGCTGCTAAGCCTGTGCAAGCTCCTCAGGGTTACT---CCTCAGCTCCATATGTAGGTTCTGGTGCACCCTCTTCAATGTATCTTGGCGTGCCACCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254326112|gb|GR840704.1|GR840704
EST:     CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCT                         AAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCT
genomic: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCTgtaagatatt ... cattatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCT
EST: gi|9440085|gb|BE440596.1|BE440596
EST:     CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCT                         AAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCT
genomic: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCTgtaagatatt ... cattatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCT
EST: gi|21994497|gb|BQ786025.1|BQ786025
EST:     CTTGTATCATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCT                         AAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCT
genomic: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCTgtaagatatt ... cattatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCT
EST: gi|7589523|gb|AW705295.1|AW705295
EST:     CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCT                         AAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCT
genomic: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCTgtaagatatt ... cattatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCT
EST: gi|21887054|gb|BQ740267.1|BQ740267
EST:     CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCT                         AAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCT
genomic: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCTgtaagatatt ... cattatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaagctactttaatcattgaatctctttatgtattcattcaccattatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCACAGGGTTATTCATCCTCAGCTCCTTACTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTGCCAC
          ctttaat  putative branch site (score: 4)
           tttaatcattgaat  TA-rich tract