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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgatagaacatattatataaaatgaaaatgtttattgatgatatctttatattgtgtgaagctttgtatatgataattttaacctcttttatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCTGATTCCTGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTAGAACCA

Basic information

species Glycine max
transcript GLYMA17G38220.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G38220.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0122g00430.t01 (Vitis vinifera), 3'ss of exon 3
ttgatagaacatattatataaaatgaaaatgtttattgatgatatcttta----tattgtgtgaagctttgtata-tgata--attttaacctcttttatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCTGATTCCTGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTAGAACCA
       |   ||||        |       || |        | |||||    | |||  | ||  |||   |  | |||  | |||||  ||| ||||   | || ||||||||| ||||||| || ||||||||||||||| || | ||||||||  |||| ||| ||||||||||||||||||||||||||||||| ||||| 
-------agtctatttccattcctatcccctttcaccagcctcacctttagttcttttgacttaaattttaactgctaatatcagtttaatttctgttatttttcagTTTTGAGATACTGCATGCGCGCTGGGCTATGCTTGCAGCCCTTGGTGCTCTACTTCCAGAATTATTAGACCTATTGGGAGCCTTTCACTTTGTTGAACCT

upper sequence: GLYMA17G38220.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S215_109V6.3 (Physcomitrella patens), 3'ss of exon 4
ttgatagaacatattatataaaatgaaaatgtttattgatgatatctttatattgtgtgaagctttgtatatgataatt-ttaacctcttttatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCTGATTCCTGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTAGAACCA
 |  |         |   |    ||| | |  || |  ||   |   |||         || ||      || |   |  |||   | |  |    || ||||||||||| ||||||||||| ||||| ||||||||  |  | ||||   | || || ||  |  | ||||  || || |   | || |||   || || 
-tactgttttccggttgtttgtgtgagattccttttccatcgcaagcttactcgtaacaaaactaatggaattaccttcattattgtttcatcgtgatcagCTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGTAATCCCGGAGCTTCTGGACCGCTTTGGTGGAGTCCAATTTTCGGAGCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404614|gb|EV274428.1|EV274428
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|209718155|gb|BW677426.1|BW677426
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|15285088|gb|BI468979.1|BI468979
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|209716259|gb|BW657562.1|BW657562
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|120491987|gb|EH220154.1|EH220154
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|151395535|gb|EV265412.1|EV265412
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|120491971|gb|EH220138.1|EH220138
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|10846954|gb|BF069679.1|BF069679
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCC
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCC
EST: gi|209714192|gb|BW679521.1|BW679521
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|193642044|gb|FK593654.1|FK593654
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCGGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|22539788|gb|BU089631.1|BU089631
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|24136537|gb|BU927047.1|BU927047
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|22540334|gb|BU090177.1|BU090177
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTNTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCNGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|51337747|gb|CO981613.1|CO981613
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|22524231|gb|BU083042.1|BU083042
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|193379221|gb|FK345227.1|FK345227
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|192297292|gb|FG990626.1|FG990626
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|20075945|gb|BQ094728.1|BQ094728
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|193623783|gb|FK578241.1|FK578241
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCNCTGCGGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|209703879|gb|BW667920.1|BW667920
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|151404020|gb|EV273830.1|EV273830
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|120533754|gb|EH261887.1|EH261887
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|6727137|gb|AW311491.1|AW311491
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTATGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCAGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
EST: gi|13481342|gb|BG510685.1|BG510685
EST:     GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAA                         CTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT
genomic: GACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAAgtatgtcatt ... tatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttatattgtgtgaagctttgtatatgataattttaacctcttttatcaataagCTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCTGATTCCTGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTAGAACCA
                                ttttaac  putative branch site (score: 2)
                                ttttaacctctttt  CT-rich tract
                  tttgtatatgataatt  TA-rich tract