Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tcagtgctctctccaccattttctccttcttcctttgctttcacgaagttgtaattgcattaattctgtcatgaatgttctatgaggttctgcttttgttgctcttaggttgtctaaattgttataacaattgatttgttggtaacttgtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCACTCTGTGTTGATATCACTGATAATGAGTTGGCGTATTTAGAGTGCATCCA

Basic information

species Glycine max
transcript GLYMA17G37730.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37730.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os12g10560.1 (Oryza sativa), 3'ss of exon 3
tcagtgctctctccaccattttctccttcttcctttgctttcacgaagttgtaattgcattaattctgtcatgaatgttctatgaggttctgcttttgttgctcttaggt-tgtctaaattgttataacaattgatttgttggtaacttgtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCACTCTGTGTTGATATCACTGATAATGAGTTGGCGTATTTAGAGTGCATCCA
                                                           ||     | |||| ||  ||| |   | | || ||        |||| ||| | |   |||   ||||   | |   ||  || ||| || || ||||||| || ||||| ||  | ||||||||||||||||| ||  | ||||||||| | ||||| ||||||||||| ||||||||||| || || || ||||||| 
---------------------------------------------------------tgttgggagtatcatcaagtttcaaaatgttacttctgacagcagtctttggtatatgggaatcagtatattcactttctttgtgataattt-tcatgcagTTCCGGACGCATAAAGTTATATACAGGCGATATGCAGGACTGTTTTTCTCAATGTGTGTGGATATCACTGACAATGAGTTGGCATACTTGGAATGCATCC-

upper sequence: GLYMA17G37730.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g03340.t01 (Vitis vinifera), 3'ss of exon 3
tcagtgctctctccaccattttctccttcttcctttgctttcacgaagttgtaattgcattaattctgtcatgaatgttctatgaggttctgcttttgttgctcttaggttgtctaaattgttataacaattgatttgttggtaacttgtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCACTCTGTGTTGATATCACTGATAATGAGTTGGCGTATTTAGAGTGCATCCA
                                              || | ||   |||     ||  |  ||| | || ||| |  |  |  | | |  ||| |       |  |   || |  |  |   |||||      || ||  ||| ||||| ||||| |||||| | || ||||||||||||||||| || || |||||| | |||||||||||||||||||||||||| || ||||| |||||||||| 
----------------------------------------------agatttaga-gcagggggtcctttgtgactattttattaaatcattgtgtagcagctgtc----cattgagcatgattaagtaggagattt------aattttcctttcagTTCCGTACACACAAGGTCATCTACAGGCGATATGCTGGATTGTTCTTCTCATTGTGTGTTGATATCACTGATAATGAGTTAGCATATTTGGAGTGCATCC-

upper sequence: GLYMA17G37730.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g14240.t01 (Vitis vinifera), 3'ss of exon 4
tcagtgctctctccaccattttctccttcttcctttgctttcacgaagttgtaattgcattaattctgtcatgaatgttctatgaggttctgcttttgttgctcttaggttgtctaaattgttataacaattgatttgttggtaacttgtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCACTCTGTGTTGATATCACTGATAATGAGTTGGCGTATTTAGAGTGCATCCA
                                                        |||  | |  | |||   || || ||  |    ||     || || |||    | |  |||    | || | |  |||||       || || |||||||||| ||||| |||||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||| 
-----------------------------------------------------ccagcacaattattatcaattattttataacattacctttacatgctgttctctattggattaagggctgattatacctgatt----ataaatttttcttgcagTTCCGTACACACAAGGTAATCTACAGGCGATATGCTGGATTATTTTTCTCACTGTGTGTTGATATGACAGATAATGAGTTGGCATATTTAGAGTGCATCC-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196591|gb|HO041334.1|HO041334
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|31474478|gb|CD416506.1|CD416506
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACNAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|120494113|gb|EH222280.1|EH222280
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|208261961|gb|GE057908.1|GE057908
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|151412034|gb|EV281845.1|EV281845
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGATTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|208081831|gb|GD879459.1|GD879459
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCAAAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|16345364|gb|BI970959.1|BI970959
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|12773437|gb|BG238364.1|BG238364
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|12773864|gb|BG238791.1|BG238791
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|298170230|gb|HO018854.1|HO018854
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|298167144|gb|HO010583.1|HO010583
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTCATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|38193189|gb|CF922395.1|CF922395
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|21602650|gb|BQ612981.1|BQ612981
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|8283304|gb|BE020865.1|BE020865
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|6666885|gb|AW278344.1|AW278344
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|7795478|gb|AW780875.1|AW780875
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|15200385|gb|BI424322.1|BI424322
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|31312367|gb|CD397570.1|CD397570
EST:     TNATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATAGCAGGCGATATGCTGGGTTATTTTTCTCA
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATA-CAGGCGATATGCTGGGTTATTTTTCTCA
EST: gi|17519104|gb|BM188146.1|BM188146
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|193460745|gb|FK427514.1|FK427514
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGNGT                         TTCGT-CGCACAAGATAATATACAGG
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGG
EST: gi|4285580|gb|AI440924.1|AI440924
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCT-AC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|20448913|gb|BQ253037.1|BQ253037
EST:     TCATCGGCTCGTCGTATACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|17153474|gb|BM143407.1|BM143407
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|120494291|gb|EH222458.1|EH222458
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|192322713|gb|FK014404.1|FK014404
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|120494235|gb|EH222402.1|EH222402
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|151412841|gb|EV282653.1|EV282653
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|10236137|gb|BE804955.1|BE804955
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|209699340|gb|BW664059.1|BW664059
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|192297663|gb|FG989582.1|FG989582
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|26269345|gb|CA820408.1|CA820408
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|298169760|gb|HO021120.1|HO021120
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|298187150|gb|HO034299.1|HO034299
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|31462386|gb|CD404414.1|CD404414
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
EST: gi|9204083|gb|BE330307.1|BE330307
EST:     TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGT                         TTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC
genomic: TCATCGGCTCGTCGTAAACAGAGACCCTAAATACACAAATTTCGTCGAGGtcagtgctct ... gtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaggttgtctaaattgttataacaattgatttgttggtaacttgtcttgcagtTTCGTACGCACAAGATAATATACAGGCGATATGCTGGGTTATTTTTCTCACTCTGTGTTGATATCACTGATAATGAGTTGGCGTATTTAGAGTGCATCCA
                                    tggtaac  putative branch site (score: 2)
                                          cttgtctt  CT-rich tract
           taaattgttataacaa  TA-rich tract