Sequence
atgc intronic sequence ATGC exonic sequencegtgagtcatctgatttgaaaaatatatttcaacttcttattttggttgatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggtttcctgtctttctctttagGATTTTGAATTCGGTGAGTTGAATGAAGTCCTGCAGTGCTATCCACATGGCTATCATGGTGTGGATAAGGAAGGAAGACCTATTTATATTGAGAGGTTAG
Basic information
species | Glycine max |
transcript | GLYMA17G37150.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G37150.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 3'ss of exon 2
gtgagtcatctgatttgaaaaatatatttcaacttcttattttggttgatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggt---ttcctgtct------ttctctttagGATTTTGAATTCGGTGAGTTGAATGAAGTCCTGCAGTGCTATCCACATGGCTATCATGGTGTGGATAAGGAAGGAAGACCTATTTATATTGAGAGGTTAG
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--------------------------------------------------------gtatacagttagtt--actttcgtgtgttgtgcaaaatattatttgttaca-acggccttagagagttgctgactgagttcttcactccagGACTTTGAGTTTCCTGAGTTGGATGAGGTTCTCAGGTACTACCCTCAGGGATATCATGGTGTTGATAAGGAAGGAAGACCTGTTTACATCGAAAGATTAG
upper sequence: GLYMA17G37150.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G75370.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtcatctgatttgaaaaatatatttcaacttcttattttggttgatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggtttcc-tgtctttctctttagGATTTTGAATTCGGTGAGTTGAATGAAGTCCTGCAGTGCTATCCACATGGCTATCATGGTGTGGATAAGGAAGGAAGACCTATTTATATTGAGAGGTTAG
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--------------------------------------------gtgaattacatgtttttaaaaaaaat---cttaatatgttacttttaatc-----tcatgtgatggt--tttaatctcaatatgtgtgttaatagGATTTTGAATTTGAAGAGTTTGATGAAGTTCTGAAATACTACCCTCATGGTTATCATGGTGTTGATAAAGAAGGAAGGCCTGTTTACATTGAAAGATTAG
upper sequence: GLYMA17G37150.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtcatctgatttgaaaaatatatttcaacttcttattttggtt-gatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggtt----tcctgtctttctctttagGATTTTGAATTCGGTGAGTTGAATGAAGTCCTGCAGTGCTATCCACATGGCTATCATGGTGTGGATAAGGAAGGAAGACCTATTTATATTGAGAGGTTAG
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---------------------gtaatctcaaatttcatcccatgattagattctatttt-ctgaagcaatgttccattactggtttctcagatctattggtttgttaacattgttctaattgagatttcatgtttctccc-agGATTTTGAGTTCAAAGAGTTGAACGAAGTACTCAAGTACTATCCTCAGGGTTATCACGGTGTGGATAAGGAGGGGAGACCCGTTTATATTGAAAGACTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193580540|gb|FK534515.1|FK534515EST: CCAACATGATCCAATGGAGGAAAGAATATGGTACTGATACAATTATGGAG GATTTTGAATTCGGTGAGTTGAATGAAGTCCTGCAGTGCTATCCACATGGC
genomic: CCAACATGATCCAATGGAGGAAAGAATATGGTACTGATACAATTATGGAGgtgagtcatc ... ttctctttagGATTTTGAATTCGGTGAGTTGAATGAAGTCCTGCAGTGCTATCCACATGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttgaaatcattgttcatgatatactactttggtttcctgtctttctctttagGATTTTGAATTCGGTGAGTTGAATGAAGTCCTGCAGTGCTATCCACATGGCTATCATGGTGTGGATAAGGAAGGAAGACCTATTTATATTGAGAGGTTAG
ctactttggtttcctg CT-rich tract
aaatcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtcatctgatttgaaaaatatatttcaacttcttattttggttgatcctgttttgtttgattaactgtacttttttagttttttgaaatcattgttcatgatatactactttggtttcctgtctttctctttagGATTTTGAATTCGGTGAGTTGAATGAAGTCCTGCAGTGCTATCCACATGGCTATCATGGTGTGGATAAGGAAGGAAGACCTATTTATATTGAGAGGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG