1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
tacatgcctctgtagtgtctcaaatatatgcgtgttatttggggtggaacataaataggcacagttaaatattgttaagtttgacaattactctgttttttgcaggCAGAGGAATTGGCCAAAGAGGATTTTAAGGGCTCCAAGG
species | Glycine max |
transcript | GLYMA17G37040.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGAAACCGTACCATGCGGCCCTGTCTCTCAAATGCTGTGAAAGTTCAGG CAGAGGAATTGGCCAAAGAGGATTTTAAGGGCTCCAAGTEST: gi|57574958|gb|CX547933.1|CX547933
genomic: GGGAAACCGTACCATGCGGCCCTGTCTCTCAAATGCTGTGAAAGTTCAGGtacatgcctc ... tttttgcaggCAGAGGAATTGGCCAAAGAGGATTTTAAGGGCTCCAAGG
EST: GGGAAACCGTACCATGCGGCCCTGTCTCTCAAATGCTGTGAAAGTTCAGG CAGAGGAATTGGCCAAAGAGGATTTTAAGGGCTCCAAGTEST: gi|192322660|gb|FK014997.1|FK014997
genomic: GGGAAACCGTACCATGCGGCCCTGTCTCTCAAATGCTGTGAAAGTTCAGGtacatgcctc ... tttttgcaggCAGAGGAATTGGCCAAAGAGGATTTTAAGGGCTCCAAGG
EST: GGGAAACCGTACCATGCGGCCCTGTCTCTCAAATGCTGTGAAAGTTCAG- CAGAGGA-TTGGCCAAAGAGGATTTTAAGGGCTCCAA
genomic: GGGAAACCGTACCATGCGGCCCTGTCTCTCAAATGCTGTGAAAGTTCAGGtacatgcctc ... tttttgcaggCAGAGGAATTGGCCAAAGAGGATTTTAAGGGCTCCAA
taaataggcacagttaaatattgttaagtttgacaattactctgttttttgcaggCAGAGGAATTGGCCAAAGAGGATTTTAAGGGCTCCAAGG
gtttgac putative branch site (score: 4)
ttactctgtttttt putative PPT
ttaaatattgttaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatgcctctgtagtgtctcaaatatatgcgtgttatttggggtggaacataaataggcacagttaaatattgttaagtttgacaattactctgttttttgcaggCAGAGGAATTGGCCAAAGAGGATTTTAAGGGCTCCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT