1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tggagatattattctcttctttcaatttgctatacctttatattatcaataatacatgtgatgcacataattaaagttgtctagttatttacataataggATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACC
species | Glycine max |
transcript | GLYMA17G36620.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGAAAATATGTATCAACCACCAATTCAGTATTTCCCCTTGGGGTCCAGG ATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGCEST: gi|7926565|gb|AW832591.1|AW832591
genomic: ACGAAAATATGTATCAACCACCAATTCAGTATTTCCCCTTGGGGTCCAGGtatgagttgt ... acataataggATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGC
EST: ACGAAAATATGTATCAACCACCAATTCAGTATTTCCCCTTGGGGTCCAGG ATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGCEST: gi|12489632|gb|BG043153.1|BG043153
genomic: ACGAAAATATGTATCAACCACCAATTCAGTATTTCCCCTTGGGGTCCAGGtatgagttgt ... acataataggATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGC
EST: ACGAAAATATGTATCAACCACCAATTCAGTATTTCCCCTTGGGGTCCAGG ATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGC
genomic: ACGAAAATATGTATCAACCACCAATTCAGTATTTCCCCTTGGGGTCCAGGtatgagttgt ... acataataggATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGC
tcaataatacatgtgatgcacataattaaagttgtctagttatttacataataggATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACC
tagttatttacataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggagatattattctcttctttcaatttgctatacctttatattatcaataatacatgtgatgcacataattaaagttgtctagttatttacataataggATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACC
- - - - - - - - - - - - - -tgctata
- - - - - - - - - - - - - - - - - - - - - - - - - - tacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcac