1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gatatatattttgtctattatgagcagagccattccattgttacactttgcacggttcactcaagggagacttgctttaatttttattttttttggttagATGGTGGATGGAGGTCCTGTAGCCCCAAAAGCACCTCCTGCCAGTAAAGAGGTTGTGGCAAATCTTCCGGTCATTACTCTCACAGAGGAAATCCTGGCTA
species | Glycine max |
transcript | GLYMA17G33630.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAATATGCTTCAAGATCTTCTAAATAGATTGGAAGAAGTTGTGCCCTTG ATGGTGGATGGAGGTCCTGTAGCCCCAAAAGCACCTCCTGCCAGTAAAGAGEST: gi|192301686|gb|FG994394.1|FG994394
genomic: CAAATATGCTTCAAGATCTTCTAAATAGATTGGAAGAAGTTGTGCCCTTGgtattttatt ... ttttggttagATGGTGGATGGAGGTCCTGTAGCCCCAAAAGCACCTCCTGCCAGTAAAGAG
EST: CAAATATGCTTCAAGATCTTCTAAATAGATTGGAAGAAGTTGTGCCCTTG ATGGTGGATGGAGGTCCTGTAGCCCCAAAAGCACCTCCTGCCAGTAAAGAGEST: gi|58020175|gb|CX706917.1|CX706917
genomic: CAAATATGCTTCAAGATCTTCTAAATAGATTGGAAGAAGTTGTGCCCTTGgtattttatt ... ttttggttagATGGTGGATGGAGGTCCTGTAGCCCCAAAAGCACCTCCTGCCAGTAAAGAG
EST: CAAATATGCTTCAAGATCTTCTAAATAGATTGGAAGAAGTTGTGCCCTTG ATGGTGGATGGAGGTCCTGTAGCCCCAAAAGCACCTCCTGCCAGTAAAGAGEST: gi|22932838|gb|BU549977.1|BU549977
genomic: CAAATATGCTTCAAGATCTTCTAAATAGATTGGAAGAAGTTGTGCCCTTGgtattttatt ... ttttggttagATGGTGGATGGAGGTCCTGTAGCCCCAAAAGCACCTCCTGCCAGTAAAGAG
EST: CAAATATGCTTCAAGATCTTCTAAATAGATTGGAAGAAGTTGTGCCCTTG ATGGTGGATGGAGGTCCTGTAGCCCCAAAAGCACCTCCTGCCAGTAAAGAG
genomic: CAAATATGCTTCAAGATCTTCTAAATAGATTGGAAGAAGTTGTGCCCTTGgtattttatt ... ttttggttagATGGTGGATGGAGGTCCTGTAGCCCCAAAAGCACCTCCTGCCAGTAAAGAG
ctttgcacggttcactcaagggagacttgctttaatttttattttttttggttagATGGTGGATGGAGGTCCTGTAGCCCCAAAAGCACCTCCTGCCAGTAAAGAGGTTGTGGCAAATCTTCCGGTCATTACTCTCACAGAGGAAATCCTGGCTA
ctttaat putative branch site (score: 4)
tttttatttttttt CT-rich tract
ttgctttaatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatatattttgtctattatgagcagagccattccattgttacactttgcacggttcactcaagggagacttgctttaatttttattttttttggttagATGGTGGATGGAGGTCCTGTAGCCCCAAAAGCACCTCCTGCCAGTAAAGAGGTTGTGGCAAATCTTCCGGTCATTACTCTCACAGAGGAAATCCTGGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - -ccattcc
- - - - - - - - - - - - - - - - - - - - - - - - tgcacgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgctt