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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattattcttcttttttttaaaaaaattttaattttatcttgggttgatttgtgatgtttgatgatattttgtttgtttgtttttgtgatgttagtttggatggatcatggaattggaattaatctgtgtgtgtgtgtgtgtttgttggtttatagGGATCTGGAGAGGAGGATTGTGGAAGCTGAGATGGAATTGTCATTGGCTAAGAGCCAAGGGTACCTCAAGGGGCAAGGCCAGAAAAGTAGCTCTTCCGAT

Basic information

species Glycine max
transcript GLYMA17G32180.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G32180.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0008g06480.t01 (Vitis vinifera), 3'ss of exon 3
gtaaattattcttcttttttttaaaaaaattttaattttatcttgggttgatttgtgatgtttgatgatattttgtttg-tttgtttttgtgatgttagtttggatg----gatcatggaattggaat-taatctgt-gtgtgtgtgtgtgtttgttggt-ttatagGGATCTGGAGAGGAGGATTGTGGAAGCTGAGATGGAATTGTCATTGGCTAAGAGCCAAGGGTACCTCAAGGGGCAAGGCCAGAAAAGTAGCTCTTCCGAT
                                                                   ||||||| ||   ||| | |   |   |||| ||| |||     | | |||    ||||   |  | | | |   || ||  |   || || | ||| || ||| |||||| |||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||| | ||     |  ||||| | ||||||   
-----------------------------------------------------------------gtatattttcttcactttatctccttctagttaattttgataatttggtgatgttgctggaggatggtatatagaaggtttgcattgatgatgatgttacagAGATTTGGAGAAGAGGATTGTGGAAGCTGAGATGGATTTGACATTGGCCAAGAGTCAAGGGTACCTCAAGAGCCAGTTAAAACAAAGTGGGTCTTCCTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatcatggaattggaattaatctgtgtgtgtgtgtgtgtttgttggtttatagGGATCTGGAGAGGAGGATTGTGGAAGCTGAGATGGAATTGTCATTGGCTAAGAGCCAAGGGTACCTCAAGGGGCAAGGCCAGAAAAGTAGCTCTTCCGAT
                aattaat  putative branch site (score: 3)
                aattaatct  TA-rich tract