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...tccttaaatctcactaactggttacttgaagcactattttaagtaaaaatgtgaattatcaagaatgctagttgatgtaacacacattttttgaattcagATTATGTTGCATTTGGACATACTTCGAGTAAAGAAAGGGTGAGCAGTATTGTTGAAGAAGGATCAGACTGCACTTTTCACAATAAACTGGAAATGGTGGC
species | Glycine max |
transcript | GLYMA17G31400.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGTGGATGCCGATGTGAGGGATGTAAGAATGTCCATGGCAAGAAAGAAG ATTATGTTGCATTTGGACATACTTCGAGTAAAGAAAGGGTGAGCAGTATTGEST: gi|207760710|gb|GD734033.1|GD734033
genomic: TAGTGGATGCCGATGTGAGGGATGTAAGAATGTCCATGGCAAGAAAGAAGgtaagaattt ... ttgaattcagATTATGTTGCATTTGGACATACTTCGAGTAAAGAAAGGGTGAGCAGTATTG
EST: TAGTGGATGCCGATGTGAGGGATGTAAGAATGTCCATGGCAAGAAAGAAG ATTATGTTGCATTTGGACATACTTCGAGTAAAGAAAGGGTGAGCAGTATTGEST: gi|21677506|gb|BQ629857.1|BQ629857
genomic: TAGTGGATGCCGATGTGAGGGATGTAAGAATGTCCATGGCAAGAAAGAAGgtaagaattt ... ttgaattcagATTATGTTGCATTTGGACATACTTCGAGTAAAGAAAGGGTGAGCAGTATTG
EST: TAGTGGATGCCGATGTGAGGGATGTAAGAATGTCCATGGCAAGAAAGAAG ATTATGTTGCATTTGGACATACTTCGAGTAAAGAAAGGGTGAGCAGTATTGEST: gi|21995121|gb|BQ786649.1|BQ786649
genomic: TAGTGGATGCCGATGTGAGGGATGTAAGAATGTCCATGGCAAGAAAGAAGgtaagaattt ... ttgaattcagATTATGTTGCATTTGGACATACTTCGAGTAAAGAAAGGGTGAGCAGTATTG
EST: TAGTGGATGCCGATGTGAGGGATGTAAGAATGTCCATGGCAAGAAAGAAG ATTATGTTGCATTTGGACATACTTCGAGTAAAGAAAGGGTGAGCAGTATTG
genomic: TAGTGGATGCCGATGTGAGGGATGTAAGAATGTCCATGGCAAGAAAGAAGgtaagaattt ... ttgaattcagATTATGTTGCATTTGGACATACTTCGAGTAAAGAAAGGGTGAGCAGTATTG
aaaatgtgaattatcaagaatgctagttgatgtaacacacattttttgaattcagATTATGTTGCATTTGGACATACTTCGAGTAAAGAAAGGGTGAGCAGTATTGTTGAAGAAGGATCAGACTGCACTTTTCACAATAAACTGGAAATGGTGGC
atgtaac putative branch site (score: 3)
catttttt putative PPT
acattttttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttaaatctcactaactggttacttgaagcactattttaagtaaaaatgtgaattatcaagaatgctagttgatgtaacacacattttttgaattcagATTATGTTGCATTTGGACATACTTCGAGTAAAGAAAGGGTGAGCAGTATTGTTGAAGAAGGATCAGACTGCACTTTTCACAATAAACTGGAAATGGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG