Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcttgagtttttcacaataatatagttctagggttctttacaaagtaaatgtactcatcaatctctaattgcaagtacatgttgattcttctgttgcagATTATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAACACTGAACTCAGATATCTTAGTAAG

Basic information

species Glycine max
transcript GLYMA17G30770.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213601734|gb|DB980935.1|DB980935
EST:     AGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAGAG                         ATTATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAACACTGAACTCAGA
genomic: AGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAGAGgtaaggattt ... tctgttgcagATTATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAACACTGAACTCAGA
EST: gi|213613529|gb|DB963259.1|DB963259
EST:     AGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAGAG                         ATTATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAACACTGAACTCAGA
genomic: AGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAGAGgtaaggattt ... tctgttgcagATTATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAACACTGAACTCAGA
EST: gi|17154108|gb|BM144041.1|BM144041
EST:     AGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAGAG                         ATTATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAACACTGAACTCAGA
genomic: AGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAGAGgtaaggattt ... tctgttgcagATTATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAACACTGAACTCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaatgtactcatcaatctctaattgcaagtacatgttgattcttctgttgcagATTATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAACACTGAACTCAGATATCTTAGTAAG
                                         ttcttctgtt  CT-rich tract
                   tctaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atcttgagtttttcacaataatatagttctagggttctttacaaagtaaatgtactcatcaatctctaattgcaagtacatgttgattcttctgttgcagATTATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAACACTGAACTCAGATATCTTAGTAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC