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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgtgttaaatcactttcttgctgcacactacctgtgtgttcatctctttctatgtctgtatggtagttctcaaacctatcttatcttgatattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG

Basic information

species Glycine max
transcript GLYMA17G26900.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401073|gb|EV270887.1|EV270887
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|14259240|gb|BG882148.1|BG882148
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|151412705|gb|EV282517.1|EV282517
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|16105581|gb|BI893321.1|BI893321
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|298190184|gb|HO032305.1|HO032305
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|151396592|gb|EV266469.1|EV266469
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTTCTCCTAGCCTTTACAATGGATCGCTGCTTAGCCGTTTG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTC-TTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTG
EST: gi|254342909|gb|GR859071.1|GR859071
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|23064041|gb|BU578814.1|BU578814
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|5753671|gb|AI960958.1|AI960958
EST:     AAGAAGACACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|207845484|gb|GD814073.1|GD814073
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|11687742|gb|BF595418.1|BF595418
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|298179735|gb|HO024950.1|HO024950
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|298197455|gb|HO044934.1|HO044934
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|151402880|gb|EV272693.1|EV272693
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGTTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|27424702|gb|CA936222.1|CA936222
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|6482381|gb|AW201644.1|AW201644
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCCGTT-G
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCC-GTTTG
EST: gi|11412862|gb|BF424873.1|BF424873
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
EST: gi|33390191|gb|CA853398.1|CA853398
EST:     AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAG                         ATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG
genomic: AAGAAGAAACATGGGAAGCCTTTATAGCTGATGTGCTTTTCCTGGCCAAGgtgatcacca ... atattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttctatgtctgtatggtagttctcaaacctatcttatcttgatattttcagATTTGTCTTTTTCTCCTAGCCTTTACAATGGATCGCCGCTTAGCCGTTTGGTATATTCTTGTATTTTTAG
                                        tcttgat  putative branch site (score: 4)
                                              tattttc  CT-rich tract
                                     ttatcttgatatttt  TA-rich tract