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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatttataattaagattaaaggtattacactatcatgtattaagtcatgaatttaatttaatatttatagcttatttacttgcatggtttacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATAATTCAAAAAGCTGGAGTGGCTCACAAGATTGATTTCAGAGAAGGACCTG

Basic information

species Glycine max
transcript GLYMA17G18800.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664754|gb|BI702125.1|BI702125
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATNGAGT-ANGATTGCCAAT
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTAT-GAGTTAGGATTGCCAAT
EST: gi|192331916|gb|FK026700.1|FK026700
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|151396856|gb|EV266729.1|EV266729
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|192298672|gb|FG990968.1|FG990968
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|10844495|gb|BF067754.1|BF067754
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|11690188|gb|BF597864.1|BF597864
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|14125214|gb|BG789661.1|BG789661
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTNCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|16996333|gb|BM085705.1|BM085705
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|192331915|gb|FK026699.1|FK026699
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|9565068|gb|BE474577.1|BE474577
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|12489965|gb|BG043486.1|BG043486
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|19052685|gb|BM731352.1|BM731352
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|7326739|gb|AW620537.1|AW620537
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|7326591|gb|AW620389.1|AW620389
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCCATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|6073074|gb|AW102461.1|AW102461
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|8284014|gb|BE021573.1|BE021573
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCA
EST: gi|21285555|gb|BQ473426.1|BQ473426
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|10233953|gb|BE802841.1|BE802841
EST:     CTGGTTACTCTCTGCTCTCCACTGACCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|13125541|gb|BG316111.1|BG316111
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|10233011|gb|BE801899.1|BE801899
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|9902340|gb|BE611308.1|BE611308
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTCGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|192299019|gb|FG992825.1|FG992825
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|6719304|gb|AW306951.1|AW306951
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|19053948|gb|BM732615.1|BM732615
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|37995048|gb|CF806637.1|CF806637
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|308098954|gb|HO760795.1|HO760795
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|10234308|gb|BE803196.1|BE803196
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|12688692|gb|BG155028.1|BG155028
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|15815899|gb|BI788174.1|BI788174
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|13790564|gb|BG653155.1|BG653155
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|192299084|gb|FG992860.1|FG992860
EST:     CTGGTTACTCTCTGTTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|4290097|gb|AI438020.1|AI438020
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTNTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|151393265|gb|EV263140.1|EV263140
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|192299085|gb|FG992861.1|FG992861
EST:     CTGGTTACTCTCTGTTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|15816093|gb|BI788368.1|BI788368
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|11411713|gb|BF423783.1|BF423783
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|7686708|gb|AW757356.1|AW757356
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|15001155|gb|BI321969.1|BI321969
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|192306106|gb|FG993682.1|FG993682
EST:     CTGGTTGCTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|208329022|gb|GE131188.1|GE131188
EST:     TTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: TTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|19269468|gb|BM885724.1|BM885724
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|207804716|gb|GD778155.1|GD778155
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATAGTAGAATCGCGAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGAT-GT-GAATCGCGAATA
EST: gi|192295646|gb|FG990500.1|FG990500
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|151397016|gb|EV266889.1|EV266889
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACCATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|5752909|gb|AI960196.1|AI960196
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|4290489|gb|AI438081.1|AI438081
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|9204758|gb|BE330982.1|BE330982
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGACAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|16106335|gb|BI894075.1|BI894075
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|14008595|gb|BG725199.1|BG725199
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
EST: gi|308098846|gb|HO760687.1|HO760687
EST:     CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAG                         ATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA
genomic: CTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGgtccttacct ... tacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgaatttaatttaatatttatagcttatttacttgcatggtttacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATAATTCAAAAAGCTGGAGTGGCTCACAAGATTGATTTCAGAGAAGGACCTG
           atttaat  putative branch site (score: 4)
     aatttaatttaatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaatttataattaagattaaaggtattacactatcatgtattaagtcatgaatttaatttaatatttatagcttatttacttgcatggtttacatattagATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATAATTCAAAAAGCTGGAGTGGCTCACAAGATTGATTTCAGAGAAGGACCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatggt