Sequence
atgc intronic sequence ATGC exonic sequence...tgttatataatgataaatttatattttataatattttttccctaatcaaagtaaaaaatttacatgcttttcaatcaaaaaatggttaccttttccccagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTA
Basic information
species | Glycine max |
transcript | GLYMA17G18540.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G18540.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os09g02650.1 (Oryza sativa), 3'ss of exon 7
tgttatataatgataaatttatattttataatattttttccctaatcaaagtaaaa--aat-ttacatgcttttcaatcaaaaaatggttaccttttccccagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTA
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--ataaataagaaaactcggatgtaccttgattttcactaactgttttggttgatattactattacatgcaact-gacatggatctatatttttctcctgcagCCTGTATTAGTCCAGCAGATATCAATGCTGAAGAAACACTGAACACTTTGAAATATGCTAACCGCGCTCGTAACATCCAGAATAAGCCAATT
upper sequence: GLYMA17G18540.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G50240.1 (Arabidopsis thaliana), 3'ss of exon 7
tgttatataatgataaatttat--attttataatattttttccctaatcaaagtaaaaaatttacatgcttttcaatcaaaaaatggttaccttttcccc--agCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTA
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------------gtaaacttcttagttgtatgaggtaatcccctggaaatctcttatcagttcacagattcaact-tctctctgtgtttgtgttattcttgtagCTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTT
upper sequence: GLYMA17G18540.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0031g00130.t01 (Vitis vinifera), 3'ss of exon 7
tgttatataatgataaatttatattttataatattttttccctaatcaaagtaaaaaatttacatgcttttca-atcaaaa--aatggttaccttttccccagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTA
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tataatgct-tgacaattttgatttgaatgtgcccctttgattgg--aaatttaaattcttccgtgcttctcttattaatcccaaatgctgttctccttccagCTTGCATCAGTCCTGCTGATATCAATGCTGAGGAAACTCTTAATACTCTCAAATATGCTAATCGCGCTCGTAATATCCAGAATAAGCCTGTT
upper sequence: GLYMA17G18540.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ26093 (Selaginella moellendorffii), 3'ss of exon 7
tgttatataatgataaatttatattttataatattttttccctaatcaaagtaaaaaatttacatgcttttcaatcaaaaaatggttaccttttccccagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTA
| | || ||| | || |||||| | ||| | | |||| ||| | || ||||| ||| || || || ||||||||||| ||||| |||||||| || || ||||| ||||||||||| |||||
--------------------------------------------gtatgctttttaatttttgttttcttccaatcacac----gtttggtccgacgcagCATGCGTCAGCCCTGCAGATTCTAACGCAGAAGAAACTCTCAACACTCTGAAGTATGCTAATCGGGCTCGAAATATTCAAAACAAGCCGACTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151399371|gb|EV269242.1|EV269242EST: GATTCACTTGGTGGAAACAGCAAAACTGTCATGATAG CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCA
genomic: GATTCACTTGGTGGAAACAGCAAAACTGTCATGATAGgtaatactgc ... ttttccccagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaaagtaaaaaatttacatgcttttcaatcaaaaaatggttaccttttccccagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTA
ttaccttttcccc CT-rich tract
ttttcaatcaaaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgttatataatgataaatttatattttataatattttttccctaatcaaagtaaaaaatttacatgcttttcaatcaaaaaatggttaccttttccccagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat