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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaattgaattttatttgcttgatttaggtcacaaacaaacatgtggcttgatattatttgctgtatattttgacagCTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGTCTTGTGTGGACACCAACGGGATGTCTTGGATGTTTTTAGGCCCTAGTAA

Basic information

species Glycine max
transcript GLYMA17G18430.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933831|gb|BU550970.1|BU550970
EST:     CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG                         CTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT
genomic: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagCTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT
EST: gi|31472066|gb|CD414094.1|CD414094
EST:     CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG                         CTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTT-CTTTTGAGGT
genomic: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagCTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT
EST: gi|10252640|gb|BE820406.1|BE820406
EST:     CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG                         CTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT
genomic: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagCTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT
EST: gi|7028796|gb|AW458579.1|AW458579
EST:     CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG                         CTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT
genomic: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagCTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT
EST: gi|209714170|gb|BW679499.1|BW679499
EST:     CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAG                         CTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTT-CTTTTGAGGT
genomic: CACCACCAGAAACCACAAGCCTTTCAGTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagCTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaggtcacaaacaaacatgtggcttgatattatttgctgtatattttgacagCTGGAGCAATCTGAGGATTTGATGGAAGCTGAAGAAAGTTGCTTTTGAGGTCTTGTGTGGACACCAACGGGATGTCTTGGATGTTTTTAGGCCCTAGTAA
                        gcttgat  putative branch site (score: 5)
                             atattatttgctgtat  TA-rich tract