1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtaatatcctctctatttcctttccttctccttattcttcctctttaatttcaagctaattcattccttaggtaataaactaatcttctggtttgaaataacagGGTCTAGTATCCTTGTCTCTTTCATCATACCTCTCCTTGATTAGGCCTAAAGGTTGTGGGAATGAAACAATTCCATGTGGGAAACATTCAAGCTTGGAGA
species | Glycine max |
transcript | GLYMA17G16410.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTGGGGAAGATACAAAACTTGTGCCATCTTTCAGGTCATCTTTGTAATA GGTCTAGTATCCTTGTCTCTTTCATCATACCTCTCCTTGATTAGGCCTAAAEST: gi|213604584|gb|DB966671.1|DB966671
genomic: ATTGGGGAAGATACAAAACTTGTGCCATCTTTCAGGTCATCTTTGTAATAgtaagtaata ... gaaataacagGGTCTAGTATCCTTGTCTCTTTCATCATACCTCTCCTTGATTAGGCCTAAA
EST: ATTGGGGAAGATACAAAACTTGTGCCATCTTTCAGGTCATCTTTGTAATA GGTCTAGTATCCTTATCTCTTTCATCATACCTCTCCTTGATTAGGCCTAAA
genomic: ATTGGGGAAGATACAAAACTTGTGCCATCTTTCAGGTCATCTTTGTAATAgtaagtaata ... gaaataacagGGTCTAGTATCCTTGTCTCTTTCATCATACCTCTCCTTGATTAGGCCTAAA
ttcaagctaattcattccttaggtaataaactaatcttctggtttgaaataacagGGTCTAGTATCCTTGTCTCTTTCATCATACCTCTCCTTGATTAGGCCTAAAGGTTGTGGGAATGAAACAATTCCATGTGGGAAACATTCAAGCTTGGAGA
aactaat putative branch site (score: 2)
taataaactaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaatatcctctctatttcctttccttctccttattcttcctctttaatttcaagctaattcattccttaggtaataaactaatcttctggtttgaaataacagGGTCTAGTATCCTTGTCTCTTTCATCATACCTCTCCTTGATTAGGCCTAAAGGTTGTGGGAATGAAACAATTCCATGTGGGAAACATTCAAGCTTGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA