Sequence
atgc intronic sequence ATGC exonic sequencegtatctaggatgatcattagttttacatcatttattgagttaaatagtaaatattaattattttttgtttatcagatttactaagtcataaagccatggttacttcatttttcagGTTTTTGATTTAGTTAAACTAACAGAACTCTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACTTTGTCCAAAAATCACCCAA
Basic information
species | Glycine max |
transcript | GLYMA17G14780.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G14780.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g30160.1 (Oryza sativa), 3'ss of exon 4
gtatctaggatgatcattagttttacat-catttattgagttaa-atagtaa-atattaat-tattttttgtttatcagatttactaagtcataaagccatggttacttcatttttcagGTTTTTGATTTAGTTAAACTAACAGAACTCTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACTTTGTCCAAAAATCACCCAA-
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gtgcatatgttatttaaaaggtttcgacgtaatcattgtgctgatataatagtaaattgatatgttatctgtcattctgat--actaact-gta----cctttttgtatcaatttt-agGTGTTTGATTTTGTTAAACTAACAGAATTGTACTATGCTGGTAGCCATGGAATGGACATCATGGGTCCAGTTGGGGA-ACATGATTCAGTTACTAACCATA
upper sequence: GLYMA17G14780.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G22590.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatctaggatgatcattagttttacatcatttattgagttaaatagtaaatattaattattttttgtttatcagatttactaagtcataaagccatggttacttcattttt-cagGTTTTTGATTTAGTTAAACTAACAGAACTCTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACTTTGTCCAAAAATCACCCAA
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----------------------gtaagacttctgaacaattaacca-taacattgtatcagtacaagccaaccaa--tagtcaaaacactaatacattttgagtttgttaatgcagGTTTACCAATTGGTAGGGCTAACCGAACTCTATTACGCGGGTAGTCACGGGATGGACATTATGACTCCTGTAAATCCAAATGGATCCCCTGAAGACCCTA
upper sequence: GLYMA17G14780.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatctaggatgatcattagttttacatcatttattgagttaaatagtaaatattaattattttttgtttatcagatttactaagtcataaagccatggttacttcatttttcagGTTTTTGATTTAGTTAAACTAACAGAACTCTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACT--TTGTCCAAAAATCACCCAA
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--------------------------------------gtaaagtcctaaaccgttgtaatcaagtgattgtaaagttgagtac-tcatagagtt-tttttttgttatatggcagGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACGCGGGTAGTCATGGAATGGACATAATGACTTCTTCTGATGGTCCGAATTGTTTCAAATCCACTG-- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttgtttatcagatttactaagtcataaagccatggttacttcatttttcagGTTTTTGATTTAGTTAAACTAACAGAACTCTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACTTTGTCCAAAAATCACCCAA
ttacttcatttttc CT-rich tract
atttactaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatctaggatgatcattagttttacatcatttattgagttaaatagtaaatattaattattttttgtttatcagatttactaagtcataaagccatggttacttcatttttcagGTTTTTGATTTAGTTAAACTAACAGAACTCTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACTTTGTCCAAAAATCACCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA